Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
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cushioning?
no comment
Homo sapiens (Human)
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17702169860246
A-P liver down 10%
Mus musculus (Mouse)
A-P liver down 10%
17701223302985
A-P liver up 10%
Mus musculus (Mouse)
A-P liver up 10%
17701223026255
no comment
Homo sapiens (Human)
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17683350945296
no comment
Arabidopsis thaliana (Mousear cress)
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17676392922616
no comment
Arabidopsis thaliana (Mousear cress)
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17676392534336
no comment
Arabidopsis thaliana (Mousear cress)
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17676389342143
no comment
Arabidopsis thaliana (Mousear cress)
no comment
17676300172395
no comment
Homo sapiens (Human)
no comment
17660696308618
no comment
Escherichia coli
no comment
17656346492051
organism?
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1000cell
Homo sapiens (Human)
1000cell
17703501178137
100cell
Homo sapiens (Human)
100cell
17703500891064
10cell
Homo sapiens (Human)
10cell
17703500490621
1cell
Homo sapiens (Human)
1cell
17703500115708
no comment
Mus musculus (Mouse)
no comment
17702175401700
no comment
Homo sapiens (Human)
no comment
17702174134425
no comment
Mus musculus (Mouse)
no comment
17702171551570
no comment
Mus musculus (Mouse)
no comment
17702171356493
no comment
Homo sapiens (Human)
no comment
17702171327789
no comment
Homo sapiens (Human)
no comment
17702169293980
Before setting up an individual treemap template these issues need to be considered.
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17703869775118
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17702756487578
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17702001640543
no comment
Eubacterium limosum
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17694827072328
no comment
Eubacterium Limosum
no comment
17694822520491
just simple test with DK
SB_KMAR_v1_01-14-2026
just simple test with DK
17684218848679
no comment
DK_VANPO_template_v3 (adapted by D 14012026)
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17684130916293
no comment
enteroccocus faecalis (adapted by U 22122025)
no comment
17664314612752
no comment
VA season (adapted by L 18122025)
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17660494360004
organism?
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1
no comment
17702958967921
Bae, real last downregulated 34
Pseudomonas putida KT2440 KO (adapted by N 12072024)
Bae, real last downregulated 34
17701271715244
Bae, real last upregulated 50
Pseudomonas putida KT2440 KO (adapted by N 12072024)
Bae, real last upregulated 50
17701255975358
BAE KT2440 downregulation last
Pseudomonas putida KT2440 KO (adapted by N 12072024)
BAE KT2440 downregulation last
17701255484668
BAE KT2440 upregulation list _except none
Pseudomonas putida KT2440 KO (adapted by N 12072024)
BAE KT2440 upregulation list _except none
17701232562404
Bae kt2440
Pseudomonas putida KT2440 KO (adapted by N 12072024)
Bae kt2440
17701175323878
FUR FeCl
faecalis_KO
FUR FeCl
17700508691191
FUR DPD
faecalis_KO
FUR DPD
17700508348952
no comment
kegg_cl
no comment
17696041101218
no comment
Eubacterium limosum
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17694843697761
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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