Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
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or data?
Insert an example?
Please consider!
cushioning?
no comment
Homo sapiens (Human)
no comment
17176033711709
no comment
Escherichia coli
no comment
17171648973009
no comment
Mus musculus (Mouse)
no comment
17170010654378
TL
Mus musculus (Mouse)
TL
17170008156838
no comment
Mus musculus (Mouse)
no comment
17170007267970
extr
Escherichia coli
extr
17162127079800
eco_Li_complete
Escherichia coli
eco_Li_complete
17153391916401
eco_Li_complete
Escherichia coli
eco_Li_complete
17153390463260
eco_Li_metDropout
Escherichia coli
eco_Li_metDropout
17153383456880
no comment
Homo sapiens (Human)
no comment
17150087101121
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
degradation 2
Homo sapiens (Human)
degradation 2
17189930180990
DEGRADATION
Homo sapiens (Human)
DEGRADATION
17189890188131
no comment
Mus musculus (Mouse)
no comment
17189784801527
ECP_t1_t23-
Homo sapiens (Human)
ECP_t1_t23-
17188847869109
ECP_t1_t23+
Homo sapiens (Human)
ECP_t1_t23+
17188847442445
no comment
Mus musculus (Mouse)
no comment
17188418018321
no comment
Mus musculus (Mouse)
no comment
17188400808407
no comment
Mus musculus (Mouse)
no comment
17188292682446
no comment
Homo sapiens (Human)
no comment
17187951347984
no comment
Homo sapiens (Human)
no comment
17187911669745
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
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edit tmd data?
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source?
db link?
comment?
user name?
user template previews
no comment
Test3
no comment
17188699456812
no comment
Test2
no comment
17188698001392
no comment
Test1
no comment
17188697590293
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To stop any further communication with uni-greifswald.de, please reply to this email...
17188184548635
no comment
Arabidopsis-2024-6 (adapted by M 19062024)
no comment
17187512359366
no comment
Arabidopsis-2024-6
no comment
17187366834095
no comment
Arabidopsis L6 (adapted by M 18062024)
no comment
17187280121974
no comment
Hormones v2.3
no comment
17186234563319
added two genes
_JH_test_reupload
added two genes
17182042364718
no comment
Ecoli_KEGG_ProteoMAPS_colors
no comment
17182031423904
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
cot
L.A_BH8
cot
17188910613136
leaf
L.A_BH8
leaf
17188910327910
only extracel
Arabidopsis-2024-6 (adapted by M 19062024)
only extracel
17187546067066
only extracel-cushi
Arabidopsis-2024-6 (adapted by M 19062024)
only extracel-cushi
17187545587765
no comment
Arabidopsis-2024-6 (adapted by M 19062024)
no comment
17187543206224
All-DAPs-HV-cushioning
Arabidopsis-2024-6
All-DAPs-HV-cushioning
17187506167684
HV-all-DAPs
Arabidopsis-2024-6
HV-all-DAPs
17187504207561
no comment
Ribosomal_Proteins_AT_v0.3
no comment
17187367454764
no comment
Arabidopsis L6 (adapted by M 18062024)
no comment
17187286981536
no comment
Arabidopsis L6 (adapted by M 18062024)
no comment
17187282716065
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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