Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
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or data?
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Please consider!
cushioning?
no comment
Homo sapiens (Human)
no comment
17176033711709
no comment
Escherichia coli
no comment
17171648973009
no comment
Mus musculus (Mouse)
no comment
17170010654378
TL
Mus musculus (Mouse)
TL
17170008156838
no comment
Mus musculus (Mouse)
no comment
17170007267970
extr
Escherichia coli
extr
17162127079800
eco_Li_complete
Escherichia coli
eco_Li_complete
17153391916401
eco_Li_complete
Escherichia coli
eco_Li_complete
17153390463260
eco_Li_metDropout
Escherichia coli
eco_Li_metDropout
17153383456880
no comment
Homo sapiens (Human)
no comment
17150087101121
organism?
comment?
tsv file?
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or data?
Insert an example?
Please consider!
cushioning?
no comment
Homo sapiens (Human)
no comment
17185235640338
no comment
Sus scrofa (Pig)
no comment
17184430126618
22
Homo sapiens (Human)
22
17183858363007
down regulated2
Homo sapiens (Human)
down regulated2
17183856456428
upregulated 2
Homo sapiens (Human)
upregulated 2
17183852640091
no comment
Homo sapiens (Human)
no comment
17183852640090
Hela expansion proteomics
Homo sapiens (Human)
Hela expansion proteomics
17183826652134
no comment
Homo sapiens (Human)
no comment
17183598589970
upregulated
Homo sapiens (Human)
upregulated
17183173712777
upregulated
Homo sapiens (Human)
upregulated
17183173712776
Before setting up an individual treemap template these issues need to be considered.
treemap name?
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user name?
user template previews
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Osvaldo Winston
Hi there

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Netherlands, GR, Noordlaren, 9479 Ta, Lageweg 76
To stop any further communication with uni-greifswald.de, please reply to this email...
17184696681285
added two genes
_JH_test_reupload
added two genes
17182042364718
no comment
eco00001_KEGG_unique
no comment
17182040406058
no comment
Ecoli_KEGG_ProteoMAPS_colors
no comment
17182031423904
Parsed eco00001 from KEGG
Eco00001_KEGG_Parsed
Parsed eco00001 from KEGG
17181823001657
no comment
EcKEGG_Brite_NoColor
no comment
17171695314289
first combo test
EcKEGG_COMBO
first combo test
17171690825063
Testing proper color-coding
Color_Code_Ecoli_Specific
Testing proper color-coding
17171632804164
no comment
KEGG (adapted by J 31052024)
no comment
17171628775650
refactored JSON file from KEGG Orthology in Brite
Ecoli_Test2_JaH
refactored JSON file from KEGG Orthology in Brite
17171565378494
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
Homo sapiens (Human) (version 1.0) (adapted by L 25082020)
no comment
17183158900950
no comment
_JH_test_reupload
no comment
17182044356146
no comment
Ecoli_KEGG_ProteoMAPS_colors
no comment
17182033041782
unique parsed KEGG Brite Hierarchies
Eco00001_KEGG_Parsed
unique parsed KEGG Brite Hierarchies
17181858068736
no comment
clostridium ljungdahlii v3
no comment
17181802147313
Up
clostridium ljungdahlii v3
Up
17181326384527
mean down
clostridium ljungdahlii v2
mean down
17179638305147
mean Up
clostridium ljungdahlii v2
mean Up
17179630213768
down
clostridium ljungdahlii v2
down
17179625414886
Up
clostridium ljungdahlii v2
Up
17179623269720
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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