Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
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tsv file?
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cushioning?
no comment
Homo sapiens (Human)
no comment
17769361068594
no comment
Homo sapiens (Human)
no comment
17760880726891
no comment
Homo sapiens (Human)
no comment
17750538708049
no comment
Homo sapiens (Human)
no comment
17750537994498
no comment
Homo sapiens (Human)
no comment
17750515487678
no comment
Homo sapiens (Human)
no comment
17750515382079
lgs 300
Synechocystis species 6803 (Cyanobacterium)
lgs 300
17744742470233
sps efe 300
Synechocystis species 6803 (Cyanobacterium)
sps efe 300
17744740968832
sps 300
Synechocystis species 6803 (Cyanobacterium)
sps 300
17744730778471
glgc efe 300
Synechocystis species 6803 (Cyanobacterium)
glgc efe 300
17744727428467
organism?
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tsv file?
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or data?
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cushioning?
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Homo sapiens (Human)
no comment
17773451963606
N1 Down
Homo sapiens (Human)
N1 Down
17773434290637
N1 Up
Homo sapiens (Human)
N1 Up
17773431322386
KO vs X Down
Homo sapiens (Human)
KO vs X Down
17773381506951
KO vs X Up
Homo sapiens (Human)
KO vs X Up
17773380344636
NDU Down
Homo sapiens (Human)
NDU Down
17773377910620
NDU UP
Homo sapiens (Human)
NDU UP
17773377799160
X Down
Homo sapiens (Human)
X Down
17773367558750
X UP
Homo sapiens (Human)
X UP
17773366817015
GG
Homo sapiens (Human)
GG
17772942351081
Before setting up an individual treemap template these issues need to be considered.
treemap name?
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user name?
user template previews
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K.oxytoca (adapted by G 28042026)
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17773122541514
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17770515754258
no comment
Klebsiella (adapted by G 23042026)
no comment
17768828177007
no comment
Komagataella phaffii(new)
no comment
17735471296432
no comment
Komagataella phaffii
no comment
17734868122264
no comment
VAtest (adapted by L 01032026)
no comment
17723897989527
no comment
V.album 250226 season (adapted by L 25022026)
no comment
17720382251030
no comment
Eubacterium limosum
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17694827072328
no comment
Eubacterium Limosum
no comment
17694822520491
just simple test with DK
SB_KMAR_v1_01-14-2026
just simple test with DK
17684218848679
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
K.oxytoca (adapted by G 28042026)
no comment
17773146685336
no comment
K.oxytoca (adapted by G 28042026)
no comment
17773145510224
no comment
K.oxytoca (adapted by G 28042026)
no comment
17773145510223
no comment
K.oxytoca (adapted by G 28042026)
no comment
17773142119902
no comment
K.oxytoca (adapted by G 28042026)
no comment
17773139076693
no comment
K.oxytoca (adapted by G 28042026)
no comment
17773127243597
no comment
K.oxytoca (adapted by G 28042026)
no comment
17773126779547
AminoAcids Highblueberry hoja Al+WD
AminoAcids
AminoAcids Highblueberry hoja Al+WD
17770009944924
Highblueberry (Star raiz-Al+DH+M)
AminoAcids
Highblueberry (Star raiz-Al+DH+M)
17769745237025
Highblueberry (Star hoja-Al+DH+M)
AminoAcids
Highblueberry (Star hoja-Al+DH+M)
17769745058602
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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