Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
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cushioning?
no comment
Homo sapiens (Human)
no comment
17660696308618
no comment
Escherichia coli
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17656346492051
no comment
Escherichia coli
no comment
17656289288927
no comment
Escherichia coli
no comment
17656280971538
no comment
Escherichia coli
no comment
17656280688662
z3
Homo sapiens (Human)
z3
17654533772199
Z2
Homo sapiens (Human)
Z2
17654532334841
Z
Homo sapiens (Human)
Z
17654509989037
z1
Homo sapiens (Human)
z1
17654466768314
zxy1
Homo sapiens (Human)
zxy1
17654465702593
organism?
comment?
tsv file?
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no comment
Aliivibrio fischeri ES114
no comment
17666291945328
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Homo sapiens (Human)
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17665719308542
no comment
Homo sapiens (Human)
no comment
17665718288913
no comment
Homo sapiens (Human)
no comment
17665717561387
no comment
Homo sapiens (Human)
no comment
17665716691022
no comment
Homo sapiens (Human)
no comment
17665715675141
no comment
Homo sapiens (Human)
no comment
17665715449529
no comment
Arabidopsis thaliana (Mousear cress)
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17663474841743
no comment
Arabidopsis thaliana (Mousear cress)
no comment
17663473585794
no comment
Arabidopsis thaliana (Mousear cress)
no comment
17663471272747
Before setting up an individual treemap template these issues need to be considered.
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user template previews
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Gabrielle R
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Gabrielle
17666797705179
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17666131618538
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17664440984595
no comment
enteroccocus faecalis (adapted by U 22122025)
no comment
17664314612752
UOH
EF_Go_CC
UOH
17664307981061
no comment
VA season (adapted by L 18122025)
no comment
17660494360004
no comment
Viscum album season
no comment
17660491933389
no comment
ef_go
no comment
17658193007144
GO complete genome
Efaecalis Final UOH
GO complete genome
17654936421311
no comment
Efaecalis Final
no comment
17654928112030
organism?
comment?
tsv file?
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or data?
Insert an example?
Please consider!
cushioning?
DS
L.A_BH10.2
DS
17664831192333
Crtl
L.A_BH10.2
Crtl
17664830995455
Van-Cef Total
enteroccocus faecalis (adapted by U 22122025)
Van-Cef Total
17664320602200
Cef Total
enteroccocus faecalis (adapted by U 22122025)
Cef Total
17664319670948
Van Total
enteroccocus faecalis (adapted by U 22122025)
Van Total
17664316512328
test2
VA season (adapted by L 18122025)
test2
17660514876251
test Y1
Viscum album season
test Y1
17660508603023
Cef Up
ef_go
Cef Up
17658202685953
Cef Down
ef_go
Cef Down
17658202205609
Van UP
ef_go
Van UP
17658201763242
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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