Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
upregulated
Homo sapiens (Human)
upregulated
17418892703253
downregulated
Homo sapiens (Human)
downregulated
17418890706039
stabilized
Homo sapiens (Human)
stabilized
17418887437891
no comment
Homo sapiens (Human)
no comment
17418870636933
no comment
Mus musculus (Mouse)
no comment
17418664155454
no comment
Mus musculus (Mouse)
no comment
17418651645852
no comment
Mus musculus (Mouse)
no comment
17413124230919
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
17411552462618
no comment
Mus musculus (Mouse)
no comment
17405599728533
liver up
Mus musculus (Mouse)
liver up
17374590799067
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
!
Homo sapiens (Human)
!
17427150253526
no comment
Rattus norvegicus (Rat)
no comment
17427119950404
no comment
Rattus norvegicus (Rat)
no comment
17427115962602
no comment
Rattus norvegicus (Rat)
no comment
17427115052173
no comment
Homo sapiens (Human)
no comment
17425636596575
no comment
Homo sapiens (Human)
no comment
17425634137862
TNT PL LFQ Q4
Homo sapiens (Human)
TNT PL LFQ Q4
17425511829752
TNT PL LFQ Q3
Homo sapiens (Human)
TNT PL LFQ Q3
17425510870099
TNT PL LFQ Q1
Homo sapiens (Human)
TNT PL LFQ Q1
17425507180539
TNT PL LFQ Q2
Homo sapiens (Human)
TNT PL LFQ Q2
17425505831634
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
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edit tmd data?
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source?
db link?
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user name?
user template previews
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Vasil P
Hey there,

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17425148707862
no comment
KMAR practice map 2
no comment
17424973571621
no comment
KMAR template
no comment
17424962439219
Ever thought how uni-greifswald.de could tap into TikTok for authentic leads? Our AI-powered growth service zeros in on the perfect users—based on hashtags they’re into and accounts they follow—to boost your reach and drive traffic back to you. We’ve had similar websites see 100+ new leads in a month.<br />Ready to make TikTok work for uni-greifswald.de? Test it out free for a week here: https://youtu.be/vHFXhxdtFRU?si=LzZ7XIG1FmrZvyQl
Darla Carpenter
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17424278622521
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17424265242116
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17423739881678
no comment
11 (adapted by E 13032025)
no comment
17418763538080
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
eth
KMAR template
eth
17424979191642
lac
KMAR template
lac
17424978816070
ace
KMAR template
ace
17424978315337
gly
KMAR template
gly
17424977407762
no comment
KMAR template
no comment
17424975608597
glu
KMAR template
glu
17424974978711
no comment
Homo sapiens (Human) (version 2.0) (adapted by LM 26122020)
no comment
17422385907092
no comment
Homo sapiens (Human) (version 2.0) (adapted by LM 26122020)
no comment
17422383874461
PURE_extract
Escherichia coli MG1655
PURE_extract
17422142727304
no comment
11 (adapted by E 13032025)
no comment
17418764740171
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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