Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
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cushioning?
no comment
Homo sapiens (Human)
no comment
17793877177166
no comment
Homo sapiens (Human)
no comment
17792728166147
no comment
Homo sapiens (Human)
no comment
17792728166146
no comment
Homo sapiens (Human)
no comment
17786796177771
no comment
Homo sapiens (Human)
no comment
17769361068594
no comment
Homo sapiens (Human)
no comment
17760880726891
no comment
Homo sapiens (Human)
no comment
17750538708049
no comment
Homo sapiens (Human)
no comment
17750537994498
no comment
Homo sapiens (Human)
no comment
17750515487678
no comment
Homo sapiens (Human)
no comment
17750515382079
organism?
comment?
tsv file?
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cushioning?
no comment
Mus musculus (Mouse)
no comment
17815136171950
CIP
Salmonella enterica subsp. enterica serovar Typhimurium LT2
CIP
17812876948673
Gen Bien
Salmonella enterica subsp. enterica serovar Typhimurium LT2
Gen Bien
17812871864215
AMP bien
Salmonella enterica subsp. enterica serovar Typhimurium LT2
AMP bien
17812870748710
Cepas AMP
Salmonella enterica subsp. enterica serovar Typhimurium LT2
Cepas AMP
17812870208195
Cepas AMP
Salmonella enterica subsp. enterica serovar Typhimurium LT2
Cepas AMP
17812870208194
no comment
Mus musculus (Mouse)
no comment
17812855266182
no comment
Mus musculus (Mouse)
no comment
17812845286631
D
Homo sapiens (Human)
D
17811657622427
U
Homo sapiens (Human)
U
17811653316409
Before setting up an individual treemap template these issues need to be considered.
treemap name?
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user template previews
Hufnagel_15.06.2026_CA
L.albusHufnagel_CA (adapted by C 15062026)
Hufnagel_15.06.2026_CA
17815155611748
no comment
GEN
no comment
17813745847714
no comment
GEN
no comment
17813745847713
no comment
apm6
no comment
17813742820813
no comment
amp5
no comment
17813735205427
no comment
amp3
no comment
17813735073008
no comment
amp2
no comment
17813730949439
no comment
amp
no comment
17813729450243
no comment
Cepas AMP manual5
no comment
17813726176655
no comment
Cepas AMP manual3
no comment
17813723632243
organism?
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significantly enriched acid shock
Caulobacter crescentus NA1000 (V5 file KEGG and non-KEGG (Not Mapped)) (adapted by J 09112018) (adapted by J 13112018) (adapted by J 14112018) (adapted by J 19112018)
significantly enriched acid shock
17811903755584
Fixed 1st draft
Caulobacter crescentus NA1000 (V5 file KEGG and non-KEGG (Not Mapped)) (adapted by J 09112018) (adapted by J 13112018) (adapted by J 14112018) (adapted by J 19112018)
Fixed 1st draft
17806871056019
no comment
Caulobacter crescentus NA1000 (V5 file KEGG and non-KEGG (Not Mapped)) (adapted by J 09112018) (adapted by J 13112018) (adapted by J 14112018) (adapted by J 19112018)
no comment
17806797217233
no comment
Caulobacter crescentus NA1000 (V5 file KEGG and non-KEGG (Not Mapped)) (adapted by J 09112018) (adapted by J 13112018) (adapted by J 14112018) (adapted by J 19112018)
no comment
17806793534849
no comment
Caulobacter crescentus NA1000 (V5 file KEGG and non-KEGG (Not Mapped)) (adapted by J 09112018) (adapted by J 13112018) (adapted by J 14112018) (adapted by J 19112018)
no comment
17806793534848
no comment
Caulobacter crescentus NA1000 (V5 file KEGG and non-KEGG (Not Mapped)) (adapted by J 09112018) (adapted by J 13112018) (adapted by J 14112018) (adapted by J 19112018)
no comment
17806789483430
no comment
Caulobacter crescentus NA1000 (V5 file KEGG and non-KEGG (Not Mapped)) (adapted by J 09112018) (adapted by J 13112018) (adapted by J 14112018) (adapted by J 19112018)
no comment
17805836010390
binnedORF100
_CB_treemap_20260529_v4_005
binnedORF100
17804142818456
no comment
_CB_treemap_20260529_v4_005
no comment
17803313205154
MAGORF
_CB_treemap_20260529_v3_005
MAGORF
17803087843737
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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