Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
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or data?
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cushioning?
test Wegener 2010
Synechocystis species 6803 (Cyanobacterium)
test Wegener 2010
17829226767613
no comment
Homo sapiens (Human)
no comment
17793877177166
no comment
Homo sapiens (Human)
no comment
17792728166147
no comment
Homo sapiens (Human)
no comment
17792728166146
no comment
Homo sapiens (Human)
no comment
17786796177771
no comment
Homo sapiens (Human)
no comment
17769361068594
no comment
Homo sapiens (Human)
no comment
17760880726891
no comment
Homo sapiens (Human)
no comment
17750538708049
no comment
Homo sapiens (Human)
no comment
17750537994498
no comment
Homo sapiens (Human)
no comment
17750515487678
organism?
comment?
tsv file?
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or data?
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cushioning?
ko acidic
Homo sapiens (Human)
ko acidic
17838707287528
ko neutral
Homo sapiens (Human)
ko neutral
17838691286294
wt a
Homo sapiens (Human)
wt a
17838691063689
wt n
Homo sapiens (Human)
wt n
17838687306761
bal-002 lav 1
Homo sapiens (Human)
bal-002 lav 1
17836987043919
no comment
Homo sapiens (Human)
no comment
17836984446908
no comment
Bacillus subtilis 168 (Hay bacillus)
no comment
17836048332060
no comment
Mus musculus (Mouse)
no comment
17836038561737
crt_diff1
Homo sapiens (Human)
crt_diff1
17834912368318
b2b_diff1
Homo sapiens (Human)
b2b_diff1
17834911676273
Before setting up an individual treemap template these issues need to be considered.
treemap name?
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source?
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user template previews
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17836611818704
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17836480618672
YALI
YALI tib
YALI
17834168142772
YALI
YALI tib
YALI
17834167233057
no comment
YALI test (adapted by Y 06072026)
no comment
17833307167929
all p highlight
tki_p_all
all p highlight
17827936525462
highlight catabolism
tki_normal2
highlight catabolism
17827936424651
mar_p
mm_p
mar_p
17822123955777
mar
mm
mar
17822122992067
tk_p2
tk_p
tk_p2
17819405338106
organism?
comment?
tsv file?
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or data?
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Please consider!
cushioning?
ST1035
YALI tib
ST1035
17834292295970
ST852
YALI tib
ST852
17834291848757
ST245
YALI tib
ST245
17834291471102
ST015
YALI tib
ST015
17834291007268
ST245
YALI test (adapted by Y 06072026)
ST245
17833873638886
ST852
YALI test (adapted by Y 06072026)
ST852
17833873297934
ST1035
YALI test (adapted by Y 06072026)
ST1035
17833872894961
ST015_cli_test
YALI test (adapted by Y 06072026)
ST015_cli_test
17833869496444
tki_xs_g_p all highlight2
tki_p_all
tki_xs_g_p all highlight2
17828197209785
tki_f_p_p all highlight
tki_p_all
tki_f_p_p all highlight
17828196873402
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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