Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
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E gltS
Escherichia coli
E gltS
17705289767478
WT E
Escherichia coli
WT E
17705289483616
no comment
Homo sapiens (Human)
no comment
17702169860246
A-P liver down 10%
Mus musculus (Mouse)
A-P liver down 10%
17701223302985
A-P liver up 10%
Mus musculus (Mouse)
A-P liver up 10%
17701223026255
no comment
Homo sapiens (Human)
no comment
17683350945296
no comment
Arabidopsis thaliana (Mousear cress)
no comment
17676392922616
no comment
Arabidopsis thaliana (Mousear cress)
no comment
17676392534336
no comment
Arabidopsis thaliana (Mousear cress)
no comment
17676389342143
no comment
Arabidopsis thaliana (Mousear cress)
no comment
17676300172395
organism?
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mwt_up
Mus musculus (Mouse)
mwt_up
17720257048050
mko_up
Mus musculus (Mouse)
mko_up
17720191578340
WT_UP
Mus musculus (Mouse)
WT_UP
17720189540284
ko_proteomap
Mus musculus (Mouse)
ko_proteomap
17720157613078
A 8v24 down
Pseudomonas aeruginosa PAO1
A 8v24 down
17719625456485
A 8v24 up
Pseudomonas aeruginosa PAO1
A 8v24 up
17719625170170
8v24 A all
Pseudomonas aeruginosa PAO1
8v24 A all
17719619384727
8h AvB sig down
Pseudomonas aeruginosa PAO1
8h AvB sig down
17719612349568
8h AvB sig up
Pseudomonas aeruginosa PAO1
8h AvB sig up
17719610238598
8h AvB up
Pseudomonas aeruginosa PAO1
8h AvB up
17719557001392
Before setting up an individual treemap template these issues need to be considered.
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user template previews
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Gena Rosenberger
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17717750486966
no comment
Eubacterium limosum
no comment
17694827072328
no comment
Eubacterium Limosum
no comment
17694822520491
just simple test with DK
SB_KMAR_v1_01-14-2026
just simple test with DK
17684218848679
no comment
DK_VANPO_template_v3 (adapted by D 14012026)
no comment
17684130916293
no comment
enteroccocus faecalis (adapted by U 22122025)
no comment
17664314612752
no comment
VA season (adapted by L 18122025)
no comment
17660494360004
no comment
Viscum album season
no comment
17660491933389
no comment
ef_go
no comment
17658193007144
GO complete genome
Efaecalis Final UOH
GO complete genome
17654936421311
organism?
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Bae, real last downregulated 34
Pseudomonas putida KT2440 KO (adapted by N 12072024)
Bae, real last downregulated 34
17701271715244
Bae, real last upregulated 50
Pseudomonas putida KT2440 KO (adapted by N 12072024)
Bae, real last upregulated 50
17701255975358
BAE KT2440 downregulation last
Pseudomonas putida KT2440 KO (adapted by N 12072024)
BAE KT2440 downregulation last
17701255484668
BAE KT2440 upregulation list _except none
Pseudomonas putida KT2440 KO (adapted by N 12072024)
BAE KT2440 upregulation list _except none
17701232562404
Bae kt2440
Pseudomonas putida KT2440 KO (adapted by N 12072024)
Bae kt2440
17701175323878
FUR FeCl
faecalis_KO
FUR FeCl
17700508691191
FUR DPD
faecalis_KO
FUR DPD
17700508348952
no comment
kegg_cl
no comment
17696041101218
no comment
Eubacterium limosum
no comment
17694843697761
Final
Eubacterium limosum
Final
17694837764268
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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