Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
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or data?
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cushioning?
no comment
Homo sapiens (Human)
no comment
17596029987960
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Homo sapiens (Human)
no comment
17595989425039
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Homo sapiens (Human)
no comment
17595988874256
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Homo sapiens (Human)
no comment
17595987190771
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Escherichia coli
no comment
17586867744044
no comment
Escherichia coli
no comment
17586859720333
z
Homo sapiens (Human)
z
17579459255109
1
Homo sapiens (Human)
1
17579455174177
no comment
Homo sapiens (Human)
no comment
17562190519841
no comment
Homo sapiens (Human)
no comment
17535138810880
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
Avg_NonMFP
Homo sapiens (Human)
Avg_NonMFP
17598796603042
Avg_MFPLys
Homo sapiens (Human)
Avg_MFPLys
17598747537350
no comment
Homo sapiens (Human)
no comment
17598517033143
no comment
Thalassiosira pseudonana
no comment
17598448499067
no comment
Homo sapiens (Human)
no comment
17598283456572
no comment
Homo sapiens (Human)
no comment
17598279563739
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Homo sapiens (Human)
no comment
17598276362292
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Homo sapiens (Human)
no comment
17598275976240
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Homo sapiens (Human)
no comment
17598265701905
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Homo sapiens (Human)
no comment
17598254830103
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
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edit tmd data?
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source?
db link?
comment?
user name?
user template previews
no comment
wol
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17599162232017
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PBU_DK_10072025-3
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17598666085172
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PBU_DK_10072025-2
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17598658382616
no comment
PBU_DK (adapted by D 07102025)
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17598657226475
no comment
wol (adapted by C 07102025)
no comment
17598636401299
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17598016084659
no comment
ddddaaa
no comment
17597889134021
no comment
aaaa
no comment
17597882752803
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dddd
no comment
17597879439778
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cccc
no comment
17597873262866
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
50001r1
PBU_DK_10072025-3
50001r1
17598671427728
40001r1
PBU_DK_10072025-3
40001r1
17598670994155
0001r1
PBU_DK_10072025-3
0001r1
17598668648719
no comment
1
no comment
17597905762875
no comment
1
no comment
17597905620911
no comment
1
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17597897925720
no comment
1
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17597896364584
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1
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17597895704324
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1
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17597895325114
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1
no comment
17597895000206
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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