Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
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or data?
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Please consider!
cushioning?
test Wegener 2010
Synechocystis species 6803 (Cyanobacterium)
test Wegener 2010
17829226767613
no comment
Homo sapiens (Human)
no comment
17793877177166
no comment
Homo sapiens (Human)
no comment
17792728166147
no comment
Homo sapiens (Human)
no comment
17792728166146
no comment
Homo sapiens (Human)
no comment
17786796177771
no comment
Homo sapiens (Human)
no comment
17769361068594
no comment
Homo sapiens (Human)
no comment
17760880726891
no comment
Homo sapiens (Human)
no comment
17750538708049
no comment
Homo sapiens (Human)
no comment
17750537994498
no comment
Homo sapiens (Human)
no comment
17750515487678
organism?
comment?
tsv file?
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or data?
Insert an example?
Please consider!
cushioning?
KIF2C_Down
Homo sapiens (Human)
KIF2C_Down
17844315005488
KIF2C_Up
Homo sapiens (Human)
KIF2C_Up
17844311063429
KIF2C_Up
Homo sapiens (Human)
KIF2C_Up
17844311063428
KIF2C_Up
Homo sapiens (Human)
KIF2C_Up
17844311063427
KIF2C_Up
Homo sapiens (Human)
KIF2C_Up
17844311063426
uoh total
Homo sapiens (Human)
uoh total
17839613388993
Down uoh
Homo sapiens (Human)
Down uoh
17839612827008
UP uoh
Homo sapiens (Human)
UP uoh
17839545521826
ko acidic
Homo sapiens (Human)
ko acidic
17838707287528
ko neutral
Homo sapiens (Human)
ko neutral
17838691286294
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
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source?
db link?
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user name?
user template previews
no comment
Pseudomonas putida KT2440 150726b (adapted by S 20072026)
no comment
17845395085659
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17844889436323
no comment
Pseudomonas_putida_KT2440_160726b
no comment
17842056055955
no comment
Pseudomonas_putida_KT2440_160726
no comment
17841846863109
no comment
Pseudomonas putida KT2440 150726b
no comment
17841268243443
no comment
Pseudomonas putida KT2440 KO (adapted by N 12072024) (adapted by S 15072026)
no comment
17841083559100
YALI
YALI tib
YALI
17834168142772
YALI
YALI tib
YALI
17834167233057
no comment
YALI test (adapted by Y 06072026)
no comment
17833307167929
all p highlight
tki_p_all
all p highlight
17827936525462
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
Pseudomonas putida KT2440 150726b (adapted by S 20072026)
no comment
17845399757662
no comment
Pseudomonas putida KT2440 150726b (adapted by S 20072026)
no comment
17845399405192
no comment
Pseudomonas_putida_KT2440_160726b
no comment
17842059531578
no comment
Pseudomonas_putida_KT2440_160726b
no comment
17842057671944
no comment
Pseudomonas_putida_KT2440_160726
no comment
17841860162656
no comment
Pseudomonas_putida_KT2440_160726
no comment
17841859960948
no comment
Pseudomonas putida KT2440 150726b
no comment
17841821192752
no comment
Pseudomonas putida KT2440 150726b
no comment
17841819105240
no comment
Pseudomonas putida KT2440 KO (adapted by N 12072024) (adapted by S 15072026)
no comment
17841086336088
no comment
Pseudomonas putida KT2440 KO (adapted by N 12072024) (adapted by S 15072026)
no comment
17841084091382
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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