Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
Escherichia coli
no comment
17171648973009
no comment
Mus musculus (Mouse)
no comment
17170010654378
TL
Mus musculus (Mouse)
TL
17170008156838
no comment
Mus musculus (Mouse)
no comment
17170007267970
extr
Escherichia coli
extr
17162127079800
eco_Li_complete
Escherichia coli
eco_Li_complete
17153391916401
eco_Li_complete
Escherichia coli
eco_Li_complete
17153390463260
eco_Li_metDropout
Escherichia coli
eco_Li_metDropout
17153383456880
no comment
Homo sapiens (Human)
no comment
17150087101121
vt2
Arabidopsis thaliana (Mousear cress)
vt2
17126659101650
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
Homo sapiens (Human)
no comment
17172718292875
no comment
Homo sapiens (Human)
no comment
17172718292874
no comment
Homo sapiens (Human)
no comment
17172717595465
no comment
Escherichia coli K-12 MG1655
no comment
17171599463790
Claudio data
Escherichia coli K-12 MG1655
Claudio data
17171588794857
rif 12_I
Escherichia coli K-12 MG1655
rif 12_I
17171587515229
chl 16
Escherichia coli K-12 MG1655
chl 16
17171584607412
no comment
Escherichia coli K-12 MG1655
no comment
17171583964245
test df full1
Escherichia coli K-12 MG1655
test df full1
17171581811175
test df1
Escherichia coli K-12 MG1655
test df1
17171571632756
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
browse
edit tmd data?
Insert an example?
source?
db link?
comment?
user name?
user template previews
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Alphonso Reinoso
Hello

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France, CENTRE, Cahors, 46000, 4 Chemin Du Lavarin Sud
To stop any further communication with uni-greifswald.de, please reply to this email...
17171705387553
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CompanyRegistar.com
Hello

This will severely impact your page rank, the more directories your company is listed

in, globally or locally, the greater your back links you have and the better you rank in Yahoo - Bing - Google.

It has never been simpler to promote your site

Just a few inputs and our system willl do the rest. No more struggling about CAPTCHAs - email

verification or manual link building.

We have automed all that we could have to make submitting your online property a

breeze.

See your website on the first page.

We will submit your website to thousands of directories and give you a detailed

report on the status of each submission. Although we have created an automated system to

a large extent, some of the submissions may require manual approval which could cause a slight

delay.

Making your life better

CompanyRegistar.com
17171701210489
no comment
EcKEGG_Brite_NoColor
no comment
17171695314289
first combo test
EcKEGG_COMBO
first combo test
17171690825063
Testing proper color-coding
Color_Code_Ecoli_Specific
Testing proper color-coding
17171632804164
no comment
KEGG (adapted by J 31052024)
no comment
17171628775650
added color to list
Ecoli_KEGG_Orthology_JaH_colored
added color to list
17171580920786
refactored JSON file from KEGG Orthology in Brite
Ecoli_Test2_JaH
refactored JSON file from KEGG Orthology in Brite
17171565378494
no comment
Ecoli_KO_map_test_JaH
no comment
17171445143053
GEM
modelMech
GEM
17163445077469
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
EcKEGG_Brite_NoColor
no comment
17171697150333
no comment
KEGG (adapted by J 31052024)
no comment
17171693539650
no comment
EcKEGG_COMBO
no comment
17171692244118
no comment
E.coli_DH10B_w_circuit
no comment
17171651064727
no comment
Color_Code_Ecoli_Specific
no comment
17171636933259
no comment
Ecoli_Test2_JaH
no comment
17171573282966
testing Ecoli JaH downreg 2.5
Ecoli_KO_map_test_JaH
testing Ecoli JaH downreg 2.5
17171448855222
new-LPH
kegg_cl
new-LPH
17168866025584
LPH
kegg_cl
LPH
17168858212370
no comment
kegg_cl
no comment
17168849468011
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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