bionic-vis

Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net

version 1.0
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user maps

Homo sapiens (Human)

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17176033711709

Escherichia coli

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17171648973009

Mus musculus (Mouse)

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17170010654378

Mus musculus (Mouse)

17170008156838

Mus musculus (Mouse)

no comment

17170007267970

Escherichia coli

extr

17162127079800

Escherichia coli

eco_Li_complete

17153391916401

Escherichia coli

eco_Li_complete

17153390463260

Escherichia coli

eco_Li_metDropout

17153383456880

Homo sapiens (Human)

no comment

17150087101121

organism?	select
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cushioning?

Homo sapiens (Human)

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17177626006928

Homo sapiens (Human)

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17177619017528

Homo sapiens (Human)

no comment

17176868151676

Homo sapiens (Human)

no comment

17176867413372

Homo sapiens (Human)

no comment

17176866816475

Homo sapiens (Human)

no comment

17176860386745

Homo sapiens (Human)

no comment

17176859414576

Homo sapiens (Human)

no comment

17176858788323

Homo sapiens (Human)

no comment

17176851729340

Homo sapiens (Human)

no comment

17176851451675

Before setting up an individual treemap template these issues need to be considered.
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17175677631788

EcKEGG_Brite_NoColor

no comment

17171695314289

organism?	select
comment?
tsv file?	browse
or data? Insert an example? Please consider!
cushioning?

clostridium ljungdahlii v2

first trial

17177137033787

clostridium ljungdahlii v2

no comment

17177097709820

FN_KEGG_022122_V2

no comment

17174626401013

EcKEGG_Brite_NoColor

no comment

17171697150333

KEGG (adapted by J 31052024)

no comment

17171693539650

EcKEGG_COMBO

no comment

17171692244118

E.coli_DH10B_w_circuit

no comment

17171651064727

Color_Code_Ecoli_Specific

no comment

17171636933259

Ecoli_Test2_JaH

no comment

17171573282966

Ecoli_KO_map_test_JaH

testing Ecoli JaH downreg 2.5

17171448855222

This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.

The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.

The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:

Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.

Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.

Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.

Bionic Visualizations