Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
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vt2
Arabidopsis thaliana (Mousear cress)
vt2
17126659101650
no comment
Homo sapiens (Human)
no comment
17118103770934
134112
Homo sapiens (Human)
134112
17116827956537
no comment
Homo sapiens (Human)
no comment
17116827838978
Pathways - B vs D ( Unregulated Proteins)
Homo sapiens (Human)
Pathways - B vs D ( Unregulated Proteins)
17115158383227
no comment
Homo sapiens (Human)
no comment
17115157204044
no comment
Homo sapiens (Human)
no comment
17115140052774
no comment
Homo sapiens (Human)
no comment
17115135996164
A vs D (Downregulated proteins A VS D)
Homo sapiens (Human)
A vs D (Downregulated proteins A VS D)
17115135055112
no comment
Homo sapiens (Human)
no comment
17113443616556
organism?
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Non-treated A549 cells
Homo sapiens (Human)
Non-treated A549 cells
17132590249811
no comment
Homo sapiens (Human)
no comment
17132573215520
no comment
Staphylococcus aureus N315
no comment
17132195505010
no comment
Homo sapiens (Human)
no comment
17131927013986
no comment
Homo sapiens (Human)
no comment
17131926911175
no comment
Escherichia coli K-12 MG1655
no comment
17131790865057
no comment
Homo sapiens (Human)
no comment
17130547653604
no comment
Homo sapiens (Human)
no comment
17130545564898
no comment
Homo sapiens (Human)
no comment
17130136451525
no comment
Homo sapiens (Human)
no comment
17130131822937
Before setting up an individual treemap template these issues need to be considered.
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user template previews
no comment
Mesoplasma_florum_V4_tree_UP_MAN_RED_FIXED
no comment
17113950706400
no comment
Mesoplasma_florum_V4_tree_UP_GLU_RED_FIXED
no comment
17113950394739
no comment
Mesoplasma_florum_V4_tree_UP_C6S_RED_FIXED
no comment
17113950170603
no comment
Mesoplasma_florum_V4_tree_UP_A6S_RED_FIXED
no comment
17113949006014
no comment
Gel pos
no comment
17110254629762
no comment
Geobacillus LC300 upd4
no comment
17109476254778
no comment
Geobacillus LC300 upd3
no comment
17109429048116
Protein name update
GEL upd
Protein name update
17109425469950
no comment
Geobacillus LC300 PPP upd2
no comment
17109217526667
no comment
Geobacillus LC300 PPP upd (adapted by E 19032024)
no comment
17108778709871
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no comment
Animal biomass2 (adapted by YBO 04082016)
no comment
17131757279456
no comment
world kingdom biomass
no comment
17131757161834
no comment
World biomass (adapted by Y 17072016) (adapted by Y 17072016)
no comment
17131755526478
no comment
Arabidopsis thaliana (29112019)colors7
no comment
17127483456394
no comment
Arabidopsis thaliana (29112019)colors7
no comment
17127480265791
no comment
Arabidopsis thaliana (29112019)colors7
no comment
17127478438716
tv2
Ribosomal_Proteins_AT_v0.3
tv2
17126681055435
tv1
Ribosomal_Proteins_AT_v0.3
tv1
17126661020498
no comment
Arabidopsis V15 (adapted by N 07082023)
no comment
17125646812779
no comment
Arabidopsis V15 (adapted by N 07082023)
no comment
17125646386721
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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