Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
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or data?
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Please consider!
cushioning?
vt2
Arabidopsis thaliana (Mousear cress)
vt2
17126659101650
no comment
Homo sapiens (Human)
no comment
17118103770934
134112
Homo sapiens (Human)
134112
17116827956537
no comment
Homo sapiens (Human)
no comment
17116827838978
Pathways - B vs D ( Unregulated Proteins)
Homo sapiens (Human)
Pathways - B vs D ( Unregulated Proteins)
17115158383227
no comment
Homo sapiens (Human)
no comment
17115157204044
no comment
Homo sapiens (Human)
no comment
17115140052774
no comment
Homo sapiens (Human)
no comment
17115135996164
A vs D (Downregulated proteins A VS D)
Homo sapiens (Human)
A vs D (Downregulated proteins A VS D)
17115135055112
no comment
Homo sapiens (Human)
no comment
17113443616556
organism?
comment?
tsv file?
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or data?
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Please consider!
cushioning?
empty
computing
Escherichia coli K-12 MG1655
BL_P_Ec_WT_P1087-05
17147440904828
BL_P_Ec_WT_Tuni05
Escherichia coli K-12 MG1655
BL_P_Ec_WT_Tuni05
17147440411053
BL_P_Ec_Mut_DMSO
Escherichia coli K-12 MG1655
BL_P_Ec_Mut_DMSO
17147425737484
BL_P_Ec_WT_DMSO
Escherichia coli K-12 MG1655
BL_P_Ec_WT_DMSO
17147425277224
test
Drosophila melanogaster (Fruitfly)
test
17147419909243
BL_P_Ec_Mut_wo
Escherichia coli K-12 MG1655
BL_P_Ec_Mut_wo
17147410205546
BL_P_Ec_WT_wo
Escherichia coli K-12 MG1655
BL_P_Ec_WT_wo
17147409533050
no comment
Homo sapiens (Human)
no comment
17147051188819
no comment
Homo sapiens (Human)
no comment
17147050232381
no comment
Homo sapiens (Human)
no comment
17147045350772
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
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source?
db link?
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user name?
user template previews
no comment
2024-05-02-test-yeasts2
no comment
17146471381238
no comment
2024-05-02-test-yeasts (adapted by C 02052024)
no comment
17146441714305
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17145426625716
no comment
L.A_BH10.2
no comment
17138629590243
no comment
Mesoplasma_florum_V4_tree_UP_MAN_RED_FIXED
no comment
17113950706400
no comment
Mesoplasma_florum_V4_tree_UP_GLU_RED_FIXED
no comment
17113950394739
no comment
Mesoplasma_florum_V4_tree_UP_C6S_RED_FIXED
no comment
17113950170603
no comment
Mesoplasma_florum_V4_tree_UP_A6S_RED_FIXED
no comment
17113949006014
no comment
Gel pos
no comment
17110254629762
no comment
Geobacillus LC300 upd4
no comment
17109476254778
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
1AAIndomalayan Phoridae Descriptions
no comment
17146547466730
28d
L.A_BH8
28d
17144800697620
20d
L.A_BH8
20d
17144800437776
16d
L.A_BH8
16d
17144800179567
12d
L.A_BH8
12d
17144799980792
8d
L.A_BH8
8d
17144799746688
no comment
L.A_BH8
no comment
17144799017323
no comment
L.A_BH8
no comment
17144797249563
no comment
L.A_BH10.2
no comment
17144757951210
no comment
L.A_BH10.2
no comment
17144741380608
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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