Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
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cushioning?
no comment
Homo sapiens (Human)
no comment
17793877177166
no comment
Homo sapiens (Human)
no comment
17792728166147
no comment
Homo sapiens (Human)
no comment
17792728166146
no comment
Homo sapiens (Human)
no comment
17786796177771
no comment
Homo sapiens (Human)
no comment
17769361068594
no comment
Homo sapiens (Human)
no comment
17760880726891
no comment
Homo sapiens (Human)
no comment
17750538708049
no comment
Homo sapiens (Human)
no comment
17750537994498
no comment
Homo sapiens (Human)
no comment
17750515487678
no comment
Homo sapiens (Human)
no comment
17750515382079
organism?
comment?
tsv file?
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or data?
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cushioning?
no comment
Synechocystis sp. 6803
no comment
17804506335928
TRIT1_WT_IMMUNOPEPTIDOMICS
Mus musculus (Mouse)
TRIT1_WT_IMMUNOPEPTIDOMICS
17804073419841
TRIT1_KO_IMMUNOPEPTIDOMICS
Mus musculus (Mouse)
TRIT1_KO_IMMUNOPEPTIDOMICS
17804072429346
Liver AP down full
Mus musculus (Mouse)
Liver AP down full
17804056758776
Liver AP up full
Mus musculus (Mouse)
Liver AP up full
17804056527819
Liver ER up full
Mus musculus (Mouse)
Liver ER up full
17804054187053
Liver ER down full
Mus musculus (Mouse)
Liver ER down full
17803947632734
lungs AP up full
Mus musculus (Mouse)
lungs AP up full
17803945310636
lungs AP up full
Mus musculus (Mouse)
lungs AP up full
17803945310635
lungs AP up full
Mus musculus (Mouse)
lungs AP up full
17803945310634
Before setting up an individual treemap template these issues need to be considered.
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user template previews
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17806175407936
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17805063874604
no comment
_CB_treemap_20260529_v4_005
no comment
17803312173384
no comment
_CB_treemap_20260529_v3_005
no comment
17803052026716
no comment
_CB_treemap_20260601_v2_005
no comment
17803043234119
no comment
_CB_treemap_20260529_v1_005
no comment
17800601788877
no comment
S-molecules
no comment
17799806677952
no comment
_metaP_20260527_annotatev1
no comment
17798788434374
test1
_metaP_20260526_005
test1
17797957023085
organism?
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or data?
Insert an example?
Please consider!
cushioning?
Fixed 1st draft
Caulobacter crescentus NA1000 (V5 file KEGG and non-KEGG (Not Mapped)) (adapted by J 09112018) (adapted by J 13112018) (adapted by J 14112018) (adapted by J 19112018)
Fixed 1st draft
17806871056019
no comment
Caulobacter crescentus NA1000 (V5 file KEGG and non-KEGG (Not Mapped)) (adapted by J 09112018) (adapted by J 13112018) (adapted by J 14112018) (adapted by J 19112018)
no comment
17806797217233
no comment
Caulobacter crescentus NA1000 (V5 file KEGG and non-KEGG (Not Mapped)) (adapted by J 09112018) (adapted by J 13112018) (adapted by J 14112018) (adapted by J 19112018)
no comment
17806793534849
no comment
Caulobacter crescentus NA1000 (V5 file KEGG and non-KEGG (Not Mapped)) (adapted by J 09112018) (adapted by J 13112018) (adapted by J 14112018) (adapted by J 19112018)
no comment
17806793534848
no comment
Caulobacter crescentus NA1000 (V5 file KEGG and non-KEGG (Not Mapped)) (adapted by J 09112018) (adapted by J 13112018) (adapted by J 14112018) (adapted by J 19112018)
no comment
17806789483430
no comment
Caulobacter crescentus NA1000 (V5 file KEGG and non-KEGG (Not Mapped)) (adapted by J 09112018) (adapted by J 13112018) (adapted by J 14112018) (adapted by J 19112018)
no comment
17805836010390
binnedORF100
_CB_treemap_20260529_v4_005
binnedORF100
17804142818456
no comment
_CB_treemap_20260529_v4_005
no comment
17803313205154
MAGORF
_CB_treemap_20260529_v3_005
MAGORF
17803087843737
3SeqOFF
_CB_treemap_20260529_v3_005
3SeqOFF
17803072643689
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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