Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
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or data?
Insert an example?
Please consider!
cushioning?
contDT-contT lungs up
Mus musculus (Mouse)
contDT-contT lungs up
17886928839327
contDT-contT lungs tp
Mus musculus (Mouse)
contDT-contT lungs tp
17886928340407
no comment
Homo sapiens (Human)
no comment
17883650433019
no comment
Mus musculus (Mouse)
no comment
17860267929727
no comment
Mus musculus (Mouse)
no comment
17860267194167
no comment
Mus musculus (Mouse)
no comment
17860267194166
down regulated het
Mus musculus (Mouse)
down regulated het
17860165894803
no comment
Mus musculus (Mouse)
no comment
17860158868493
upregulated het
Mus musculus (Mouse)
upregulated het
17860156154728
13LNFU_I_pos_II_neg_IFN_3
Homo sapiens (Human)
13LNFU_I_pos_II_neg_IFN_3
17858514363861
organism?
comment?
tsv file?
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or data?
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Please consider!
cushioning?
empty
computing
Bacillus subtilis 168 (Hay bacillus)
no comment
17893732481421
empty
computing
Escherichia coli K-12 MG1655
PGI_proteomap_b_number_retry
17892401766563
empty
computing
Homo sapiens (Human)
-MMC t-test
17892373147101
empty
computing
Homo sapiens (Human)
CTRL
17891369543930
empty
computing
Escherichia coli K-12 MG1655
NOG_proteomap_b_number
17891318056112
empty
computing
Escherichia coli K-12 MG1655
SERINE_proteomap_b_number
17891317747690
empty
computing
Escherichia coli K-12 MG1655
ED_proteomap_b_number
17891317414709
empty
computing
Escherichia coli K-12 MG1655
BPGM_proteomap_b_number
17891313808563
empty
computing
Escherichia coli K-12 MG1655
GAPN_proteomap_b_number
17891313401613
empty
computing
Escherichia coli K-12 MG1655
PGI_proteomap_b_number
17891312715045
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
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source?
db link?
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user name?
user template previews
computing
Tawanna Darosa
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17891998403691
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Dianna McCauley
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https://cutt.ly/hykOEpDJ
17891005819964
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Alysa Sweatt
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https://cutt.ly/2ykOEba0
17889868748734
no comment
Brmbacterium brmbiense
no comment
17889449063501
no comment
Serratia marcescens
no comment
17888599812017
LaSeedMitoProject + Ditz; Colors Lvl1
LA Hufnagel SeedMito At ColorsLvl1
LaSeedMitoProject + Ditz; Colors Lvl1
17865220638420
no comment
1071_simple
no comment
17860223426444
no comment
e1071 (adapted by J 06082026)
no comment
17860215493518
computing
LA Hufnagel CA_5_NoColor
no color code
17859126795388
AGTH-Lvl
LA Hufnagel CA_5
AGTH-Lvl
17854837522324
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
Brmbacterium brmbiense
no comment
17890350656934
no comment
Brmbacterium brmbiense
no comment
17890350528665
no comment
Brmbacterium brmbiense
no comment
17890350407860
no comment
Brmbacterium brmbiense
no comment
17890350291167
no comment
Brmbacterium brmbiense
no comment
17890350099162
no comment
Brmbacterium brmbiense
no comment
17890349733569
no comment
Serratia marcescens
no comment
17889448790932
no comment
Serratia marcescens
no comment
17889448593200
no comment
Serratia marcescens
no comment
17889447725592
O V.a
VAtest (adapted by L 01032026)
O V.a
17889422207162
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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