bionic-vis

Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net

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Escherichia coli test 15430838384000	Saccharomyces cerevisiae (Baker's yeast) 16'_RNAseq 15426165532197	Saccharomyces cerevisiae (Baker's yeast) heatshock_R1 15426160749524	Saccharomyces cerevisiae (Baker's yeast) control_R2 15426158957681	Saccharomyces cerevisiae (Baker's yeast) heatshock_R2 15425772991232
Saccharomyces cerevisiae (Baker's yeast) control_RNAseq 15425625902666	Saccharomyces cerevisiae (Baker's yeast) control_R1 15425614445817	Escherichia coli no comment 15387506305027	Homo sapiens (Human) mj_20180928_1 15381212916133	Saccharomyces cerevisiae (Baker's yeast) Seknzm-3 15372381559904

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Homo sapiens (Human) pc 15447205148524	Homo sapiens (Human) pc 15447205148523	Homo sapiens (Human) pcs 15447183526997	Homo sapiens (Human) bcs 15447180666668	Homo sapiens (Human) pcbc 15447133146795
Homo sapiens (Human) bc2 15447124330960	Homo sapiens (Human) pc2 15447118870268	Homo sapiens (Human) bc 15447110838544	Homo sapiens (Human) pc 15447100940737	Homo sapiens (Human) pc 15447099601779

Before setting up an individual treemap template these issues need to be considered.
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Pichia pastoris 3 no comment 15446911451945	Pichia pastoris TRA no comment 15446910846483	Pichia pastoris 2 no comment 15446905401185	cowan_zn02_2 no comment 15446106120008	Staphylococcus aureus COL (adapted by L 12122018) no comment 15446102685582
cowan no comment 15446091566573	gypsum_phylum no comment 15444590407792	Pichia pastoris no comment 15439822234035	Saccharomyces cerevisiae GO-Slim (adapted by TRA 03122018) no comment 15439045668268	Saccharomyces cerevisiae (adapted by TRA 03122018) Ontology derived from SGD Gene Ontology Slim Wrapper 15438968268045

organism?	select
comment?
tsv file?	browse
or data? Insert an example? Please consider!
cushioning?

Pichia pastoris 3 sing.T 15446932662601	Pichia pastoris 3 mult.T 15446931129425	Pichia pastoris 3 PS 15446929384796	Pichia pastoris 3 PM 15446922160578	SC-hm-1 no comment 15440558507001
SC-hm-1 no comment 15440558096159	SC-hm-1 no comment 15440557921512	Pichia pastoris mp 15439895179949	Pichia pastoris sp 15439892207043	Pichia pastoris no comment 15439887265316

This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.

The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON GmbH.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.

The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:

Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.

Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.

Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.