bionic-vis

Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net

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Saccharomyces cerevisiae (Baker's yeast) no comment 15477307313853	Saccharomyces cerevisiae (Baker's yeast) no comment 15477305550552	Escherichia coli test 15430838384000	Saccharomyces cerevisiae (Baker's yeast) 16'_RNAseq 15426165532197	Saccharomyces cerevisiae (Baker's yeast) heatshock_R1 15426160749524
Saccharomyces cerevisiae (Baker's yeast) control_R2 15426158957681	Saccharomyces cerevisiae (Baker's yeast) heatshock_R2 15425772991232	Saccharomyces cerevisiae (Baker's yeast) control_RNAseq 15425625902666	Saccharomyces cerevisiae (Baker's yeast) control_R1 15425614445817	Escherichia coli no comment 15387506305027

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Homo sapiens (Human) no comment 15482399045392	Homo sapiens (Human) no comment 15482398389539	Homo sapiens (Human) no comment 15482395940898	Mus musculus (Mouse) no comment 15482391387623	Mus musculus (Mouse) no comment 15482388298917
Mus musculus (Mouse) no comment 15482386821946	Mus musculus (Mouse) no comment 15482384682437	Mus musculus (Mouse) no comment 15482382593758	Mus musculus (Mouse) no comment 15482380513973	Mus musculus (Mouse) no comment 15482380513972

Before setting up an individual treemap template these issues need to be considered.
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edit tmd data? Insert an example?	text tree
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sandstone.namerica no comment 15469442300122	sandstone.antarctica no comment 15469417830137	sandstone.africa no comment 15469414829933	G.MTQ.E3 no comment 15456929184516	G.MTQ.E2 no comment 15456926980306
G.MTQ.E1 no comment 15456925096098	G.KM.E3 no comment 15456922715293	G.KM.E2 no comment 15456920525485	G.KM.E1 no comment 15456918224115	G.CL.E3 no comment 15456916410189

organism?	select
comment?
tsv file?	browse
or data? Insert an example? Please consider!
cushioning?

world kingdom biomass no comment 15471307862620	world kingdom biomass no comment 15471307502684	world kingdom biomass no comment 15471307136882	world kingdom biomass no comment 15471306754507	world kingdom biomass no comment 15471306265924
world kingdom biomass no comment 15471295418239	world kingdom biomass no comment 15471294952114	world kingdom biomass no comment 15471294259175	world kingdom biomass no comment 15471292530451	sandstone.namerica no comment 15469456767173

This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.

The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON GmbH.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.

The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:

Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.

Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.

Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.