Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
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cushioning?
no comment
Homo sapiens (Human)
no comment
16278839333718
no comment
Homo sapiens (Human)
no comment
16278838211555
no comment
Homo sapiens (Human)
no comment
16257425871284
no comment
Homo sapiens (Human)
no comment
16220917237671
1
Saccharomyces cerevisiae (Baker's yeast)
1
16217517007349
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16208304616099
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16208300826600
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16208294464421
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16208294307206
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16202342259297
organism?
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mod_protein0
Homo sapiens (Human)
mod_protein0
16279196148241
mod_protein6
Homo sapiens (Human)
mod_protein6
16279195829414
no comment
Aliivibrio fischeri ES114
no comment
16279047634667
PM
Homo sapiens (Human)
PM
16278911162805
no comment
Homo sapiens (Human)
no comment
16278810798539
no comment
Homo sapiens (Human)
no comment
16278805401677
no comment
Homo sapiens (Human)
no comment
16278805401676
no comment
Salmonella enterica subsp. enterica serovar Typhimurium LT2
no comment
16278464200276
1
Salmonella enterica subsp. enterica serovar Typhimurium LT2
1
16278464163135
no comment
Pseudomonas aeruginosa PAO1
no comment
16278402058939
Before setting up an individual treemap template these issues need to be considered.
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user template previews
no comment
8.2 -neurospora2
no comment
16278678246052
no comment
8.2 -neurospora2
no comment
16278678246051
no comment
8.2 -neurospora-2
no comment
16278669814097
no comment
8.2 -neurospora
no comment
16278664197357
no comment
clostridium_ljungdahlii_IPA_v3 (adapted by C 27062021)
no comment
16247912760495
no comment
clostridium_ljungdahlii_IPA_v2
no comment
16247063268818
clostridium ljungdahlii with IPA synthesis genes
clostridium_ljungdahlii (adapted by C 26062021)
clostridium ljungdahlii with IPA synthesis genes
16247051918815
no comment
mtm (adapted by L 16062021)
no comment
16238346152577
no comment
mtm (adapted by L 16062021)
no comment
16238346152576
07062021
Corynebacterium pseudotuberculosis 12CS0282 (adapted by J 07062021)
07062021
16230622267116
organism?
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or data?
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cushioning?
no comment
8.2 -neurospora2
no comment
16278681471901
mcdown
SC-hm-GFP5
mcdown
16273109035146
mcup
SC-hm-GFP5
mcup
16273106979021
mcup
SC-hm-GFP5
mcup
16273106979020
mscadown
SC-hm-GFP5
mscadown
16273104349384
mScaup
SC-hm-GFP5
mScaup
16273104173138
no comment
SC-hm-GFP5
no comment
16273102805393
no comment
clostridium_ljungdahlii_IPA_v3 (adapted by C 27062021)
no comment
16247914682520
no comment
clostridium_ljungdahlii_IPA_v3 (adapted by C 27062021)
no comment
16247913959858
no comment
clostridium_ljungdahlii_IPA_v3 (adapted by C 27062021)
no comment
16247913741215
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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