Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
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or data?
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Please consider!
cushioning?
GBS
Homo sapiens (Human)
GBS
17893852016091
no comment
Homo sapiens (Human)
no comment
17893846823738
contDT-contT lungs up
Mus musculus (Mouse)
contDT-contT lungs up
17886928839327
contDT-contT lungs tp
Mus musculus (Mouse)
contDT-contT lungs tp
17886928340407
no comment
Homo sapiens (Human)
no comment
17883650433019
no comment
Mus musculus (Mouse)
no comment
17860267929727
no comment
Mus musculus (Mouse)
no comment
17860267194167
no comment
Mus musculus (Mouse)
no comment
17860267194166
down regulated het
Mus musculus (Mouse)
down regulated het
17860165894803
no comment
Mus musculus (Mouse)
no comment
17860158868493
organism?
comment?
tsv file?
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or data?
Insert an example?
Please consider!
cushioning?
DC lungs Trained-contT down regulated
Mus musculus (Mouse)
DC lungs Trained-contT down regulated
17901823082054
DC lungs Trained-contT up regulated
Mus musculus (Mouse)
DC lungs Trained-contT up regulated
17901822740935
DC lungs Trained-contT up regulated
Mus musculus (Mouse)
DC lungs Trained-contT up regulated
17901819520350
DC lungs Trained-contT up regulated
Mus musculus (Mouse)
DC lungs Trained-contT up regulated
17901818114399
DC lungs Detrained-contDT up regulated
Mus musculus (Mouse)
DC lungs Detrained-contDT up regulated
17901817218740
DC lungs Detrained-contDT down regulated
Mus musculus (Mouse)
DC lungs Detrained-contDT down regulated
17901816662663
DC lungs Trained-contT down regulated
Mus musculus (Mouse)
DC lungs Trained-contT down regulated
17901773778750
DC lungs Trained-contT up regulated
Mus musculus (Mouse)
DC lungs Trained-contT up regulated
17901772995883
DC lungs Trained-contT up regulated
Mus musculus (Mouse)
DC lungs Trained-contT up regulated
17901772225474
DC lungs Detrained-contDT up regulated
Mus musculus (Mouse)
DC lungs Detrained-contDT up regulated
17901769956385
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
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source?
db link?
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user name?
user template previews
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August Littler
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17900688551804
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Soila Meeker
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17900498541805
no comment
Brmbacterium brmbiense
no comment
17889449063501
no comment
Serratia marcescens
no comment
17888599812017
LaSeedMitoProject + Ditz; Colors Lvl1
LA Hufnagel SeedMito At ColorsLvl1
LaSeedMitoProject + Ditz; Colors Lvl1
17865220638420
no comment
1071_simple
no comment
17860223426444
no comment
e1071 (adapted by J 06082026)
no comment
17860215493518
no color code
LA Hufnagel CA_5_NoColor
no color code
17859126795388
AGTH-Lvl
LA Hufnagel CA_5
AGTH-Lvl
17854837522324
no comment
Mus musculus UP
no comment
17852926949451
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
treatment
L.A_BH10.2
treatment
17900160866932
control
L.A_BH10.2
control
17900157562388
no comment
Brmbacterium brmbiense
no comment
17890350656934
no comment
Brmbacterium brmbiense
no comment
17890350528665
no comment
Brmbacterium brmbiense
no comment
17890350407860
no comment
Brmbacterium brmbiense
no comment
17890350291167
no comment
Brmbacterium brmbiense
no comment
17890350099162
no comment
Brmbacterium brmbiense
no comment
17890349733569
no comment
Serratia marcescens
no comment
17889448790932
no comment
Serratia marcescens
no comment
17889448593200
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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