Bionic Visualizations
Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
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or data?
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Please consider!
cushioning?
no comment
Homo sapiens (Human)
no comment
15571413197772
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15568850386199
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15568764309390
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15568758129897
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15563266180470
Mrn1 mock R1 unique cDNAs
Saccharomyces cerevisiae (Baker's yeast)
Mrn1 mock R1 unique cDNAs
15561402056033
Mrn1 control R2 unique cDNAs
Saccharomyces cerevisiae (Baker's yeast)
Mrn1 control R2 unique cDNAs
15561401294767
Mrn1 control R1 unique cDNAs
Saccharomyces cerevisiae (Baker's yeast)
Mrn1 control R1 unique cDNAs
15561397463572
Ssd1 control R1 unique
Saccharomyces cerevisiae (Baker's yeast)
Ssd1 control R1 unique
15548883733975
Hek2 control R1 unique
Saccharomyces cerevisiae (Baker's yeast)
Hek2 control R1 unique
15548882541973
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
C-0038-02k
Homo sapiens (Human)
C-0038-02k
15582816682276
C-MFC7-PAC
Homo sapiens (Human)
C-MFC7-PAC
15582813686289
C-MFC7-20k
Homo sapiens (Human)
C-MFC7-20k
15582813498077
C-MFC7-02k
Homo sapiens (Human)
C-MFC7-02k
15582813244993
C-1973-PAC
Homo sapiens (Human)
C-1973-PAC
15582813053296
C-1973-20k
Homo sapiens (Human)
C-1973-20k
15582812858938
C-1973-02k
Homo sapiens (Human)
C-1973-02k
15582812655705
C-0578-PAC
Homo sapiens (Human)
C-0578-PAC
15582812451504
C-0578-20k
Homo sapiens (Human)
C-0578-20k
15582812277699
C-0578-02k
Homo sapiens (Human)
C-0578-02k
15582812070487
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
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edit tmd data?
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source?
db link?
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user name?
user template previews
no comment
mtq.v2.tmd
no comment
15580208187563
no comment
km.v2.tmd
no comment
15580205798139
no comment
cl.v2.tmd
no comment
15580204169167
V4<br />COL extended with N315<br />KEGG duplicated<br />rpoF renamed to sigB<br />hit and copA removed<br />c-di-AMP molecules added (fixed colors)
Baureus COL extended test 4
V4
COL extended with N315
KEGG duplicated
rpoF renamed to sigB
hit and copA removed
c-di-AMP molecules added (fixed colors)
15580042785483
V3<br />COL extended with N315<br />KEGG duplicated<br />rpoF renamed to sigB<br />hit and copA removed<br />c-di-AMP molecules added
Baureus COL extended test 3
V3
COL extended with N315
KEGG duplicated
rpoF renamed to sigB
hit and copA removed
c-di-AMP molecules added
15580042186294
V2<br />COL extended with N315<br />KEGG duplicated<br />rpoF renamed to sigB<br />hit and copA removed
Baureus COL extended test 2
V2
COL extended with N315
KEGG duplicated
rpoF renamed to sigB
hit and copA removed
15580030835053
no comment
gyp_order_phylum
no comment
15579757368938
no comment
mtq_order_phylum
no comment
15579613591937
no comment
km_order_phylum
no comment
15579612939009
no comment
cl_order_phylum
no comment
15579577342344
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
F N 0.5 17 D recU scaled /5
Baureus COL extended test 4
F N 0.5 17 D recU scaled /5
15580882349187
F N 0.5 17 D recU scaled
Baureus COL extended test 4
F N 0.5 17 D recU scaled
15580880135343
F N 0.5 17 D
Baureus COL extended test 4
F N 0.5 17 D
15580879881361
F N 0.5 17 E cushioned
Baureus COL extended test 4
F N 0.5 17 E cushioned
15580879799215
F N 0.5 17 E
Baureus COL extended test 4
F N 0.5 17 E
15580871137263
A 0.5 17 E
Baureus COL extended test 4
A 0.5 17 E
15580870168363
A 0.5 17 E
Baureus COL extended test 4
A 0.5 17 E
15580866575119
no comment
Baureus COL extended test 4
no comment
15580863903219
mtq.v2.op
mtq.v2.tmd
mtq.v2.op
15580216179176
km.v2.op
km.v2.tmd
km.v2.op
15580209439121
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON GmbH.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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