Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
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cushioning?
ppk-EFE-light 300-2
Synechocystis species 6803 (Cyanobacterium)
ppk-EFE-light 300-2
17933133917448
ppk-light 300-2
Synechocystis species 6803 (Cyanobacterium)
ppk-light 300-2
17933133603757
phaEC-EFE light 300-2
Synechocystis species 6803 (Cyanobacterium)
phaEC-EFE light 300-2
17933133350840
phaEC-light 300-2
Synechocystis species 6803 (Cyanobacterium)
phaEC-light 300-2
17933133055920
EFE2-light 300-2
Synechocystis species 6803 (Cyanobacterium)
EFE2-light 300-2
17933132827570
EFE1-light 300-2
Synechocystis species 6803 (Cyanobacterium)
EFE1-light 300-2
17933132302411
WT-light 300_2
Synechocystis species 6803 (Cyanobacterium)
WT-light 300_2
17933117770005
ppk-EFE-light 300
Synechocystis species 6803 (Cyanobacterium)
ppk-EFE-light 300
17933003114757
ppk-light 300
Synechocystis species 6803 (Cyanobacterium)
ppk-light 300
17933002907776
phaEC-EFE-light300
Synechocystis species 6803 (Cyanobacterium)
phaEC-EFE-light300
17933002418529
organism?
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cushioning?
no comment
Synechocystis sp. 6803
no comment
17933586754974
ppk-EFE-100
Synechocystis sp. 6803
ppk-EFE-100
17933567570084
ppk-100
Synechocystis sp. 6803
ppk-100
17933567366753
phaEC-EFE-100
Synechocystis sp. 6803
phaEC-EFE-100
17933565984066
phaEC-EFE 100
Synechocystis sp. 6803
phaEC-EFE 100
17933565702181
EFE2-100-cushioning
Synechocystis sp. 6803
EFE2-100-cushioning
17933565608896
EFE2-100
Synechocystis sp. 6803
EFE2-100
17933555203387
EFE1-100-cushioning
Synechocystis sp. 6803
EFE1-100-cushioning
17933552623065
EFE1-100
Synechocystis sp. 6803
EFE1-100
17933552251189
WT-100-cushioning
Synechocystis sp. 6803
WT-100-cushioning
17933552063243
Before setting up an individual treemap template these issues need to be considered.
treemap name?
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source?
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user template previews
no comment
Homo sapiens (Human) (version 2.0) (adapted by 2 21102026)
no comment
17925455822918
no comment
Ecoli_MG1655_KEGG_191026
no comment
17924035105540
ribosomes
Mmar_2610 (adapted by F 15102026)
ribosomes
17921316643559
ribosomes
Tki_2610 (adapted by F 15102026)
ribosomes
17921314583976
ribosomes
Bsub_2610_2 (adapted by F 15102026)
ribosomes
17921312704836
ribosomes
Bsub_2610 (adapted by F 15102026)
ribosomes
17921312195895
matching anntation
Ecol_normal (adapted by F 15102026)
matching anntation
17921116062994
matching annotation
Ecol_normal (adapted by F 15102026)
matching annotation
17921112651388
matching annotation
Bsub_normal (adapted by F 15102026)
matching annotation
17921106530715
no comment
Ecoli_MG1655_KEGG_complete_corrected_color (adapted by S 15102026)
no comment
17920753408473
organism?
comment?
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cushioning?
no comment
Arabidopsis thaliana (29112019)colors7
no comment
17930581603976
no comment
Arabidopsis thaliana (29112019)colors7
no comment
17928719313898
no comment
Arabidopsis thaliana (29112019)colors7
no comment
17927572639434
no comment
Arabidopsis thaliana (29112019)colors7
no comment
17927538251384
no comment
Ecoli_MG1655_KEGG_191026
no comment
17925587672814
no comment
Ecoli_MG1655_KEGG_191026
no comment
17925580842620
D7K4
Homo sapiens (Human) (version 2.0) (adapted by 2 21102026)
D7K4
17925473294653
no comment
Homo sapiens (Human) (version 2.0) (adapted by LM 26122020)
no comment
17925120249744
no comment
Ecoli_MG1655_KEGG_191026
no comment
17924089810865
no comment
Ecoli_MG1655_KEGG_191026
no comment
17924036916647
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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