bionic-vis

Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net

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Homo sapiens (Human) no comment 15983015481056	Homo sapiens (Human) homos 15967769177666	Saccharomyces cerevisiae (Baker's yeast) no comment 15961840732190	Homo sapiens (Human) no comment 15954117291633	Homo sapiens (Human) no comment 15954116992559
Saccharomyces cerevisiae (Baker's yeast) no comment 15949362870405	Saccharomyces cerevisiae (Baker's yeast) test5 15947246229936	Homo sapiens (Human) lll 15919551158069	Mus musculus (Mouse) no comment 15887635317239	Mus musculus (Mouse) no comment 15879070433244

organism?	select
comment?
tsv file?	browse
or data? Insert an example? Please consider!
cushioning?

Homo sapiens (Human) no comment 16005049034878	Homo sapiens (Human) no comment 16005047739046	Homo sapiens (Human) hormesis 16004422967359	Homo sapiens (Human) Negative correlation 16004409414779	Homo sapiens (Human) Positive correlation 16004406272555
Leptospira interrogans serovar Copenhageni no comment 16004228709752	Homo sapiens (Human) nk down 16003470872548	Homo sapiens (Human) nk up 16003468505783	Homo sapiens (Human) 15cl down 16003465032963	Homo sapiens (Human) 15cl up 16003463315385

Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?	browse
edit tmd data? Insert an example?	text tree
source?
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comment?
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user template previews

Homo sapiens (Human) (version 1.0) (adapted by LM 15092020) (adapted by F 19092020) no comment 16005070414455	M04H_ALLIN_OK no comment 16002677713906	M024H_ALLIN no comment 16002677161440	M04H_ALLIN no comment 16002639765375	11 (adapted by T 16092020) no comment 16002548007211
Homo sapiens (Human) (version 1.0) (adapted by LM 15092020) no comment 16001597216839	Human Cellular Turnover Rates (adapted by RS 11092020) no comment 15997146030713	Human Cellular Turnover Rates (adapted by RS 10092020) no comment 15997140353836	livestock types (adapted by G 08092020) (adapted by G 08092020) no comment 15996179064811	Livestock Population (adapted by G 08092020) no comment 15996160055203

organism?	select
comment?
tsv file?	browse
or data? Insert an example? Please consider!
cushioning?

cd_heatmap cushion 16002712405788	M024H_ALLIN no comment 16002709642356	M04H_ALLIN INF-AREAS 16002705747781	World biomass with subdivision (adapted by YBO 13092016) no comment 16002653745352	Homo sapiens (Human) (version 1.0) (adapted by LM 15092020) M024H 16001699312219
Human Cellular Turnover Rates (adapted by RS 11092020) no comment 15997152448069	Human Cellular Turnover Rates (adapted by RS 10092020) no comment 15997145815215	livestock types (adapted by G 08092020) (adapted by G 08092020) no comment 15996181057444	livestock types (adapted by G 08092020) (adapted by G 08092020) no comment 15996180529606	Livestock Population (adapted by G 08092020) no comment 15996163464138

This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.

The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON GmbH.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.

The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:

Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.

Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.

Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.

Bionic Visualizations