bionic-vis

Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net

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Mus musculus (Mouse) no comment 15736204024325	Saccharomyces cerevisiae (Baker's yeast) no comment 15733053438235	Saccharomyces cerevisiae (Baker's yeast) no comment 15733051566413	Saccharomyces cerevisiae (Baker's yeast) no comment 15733048239939	Drosophila melanogaster (Fruitfly) no comment 15725300725594
Drosophila melanogaster (Fruitfly) no comment 15725294512568	Drosophila melanogaster (Fruitfly) no comment 15725293000078	Homo sapiens (Human) no comment 15722618609118	Homo sapiens (Human) ptn Caski 6h NET (todas) 15703936575204	Homo sapiens (Human) ptn Caski 6h NET (todas) 15703936575203

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Homo sapiens (Human) no comment 15757179230450	Mus musculus (Mouse) no comment 15756767000974	Homo sapiens (Human) Ub 15756365805386	Homo sapiens (Human) SUonlySite 15756339154731	Homo sapiens (Human) c2 15754712032192
Homo sapiens (Human) c1 15754707311176	Homo sapiens (Human) mydataPTvsNT 15754610770180	Homo sapiens (Human) mydataNTvsPT 15754599405330	Homo sapiens (Human) mydataTMvsPT 15754595435896	Homo sapiens (Human) mydataPTvsTM 15754567086929

Before setting up an individual treemap template these issues need to be considered.
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edit tmd data? Insert an example?	text tree
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user template previews

halite_2015_v1 (adapted by EB 06122019) no comment 15756707934740	gypsum_metagenome (adapted by E 06122019) no comment 15756672774785	halite_2015_v1 (adapted by E 06122019) no comment 15756661669524	halite_2015_v1 (adapted by E 06122019) no comment 15756657679996	gypsum_metagenome (adapted by GM2 06122019) no comment 15756655028562
Arabidopsis thaliana (02122019)colors10 no comment 15753055134142	Arabidopsis thaliana (02122019)colors9 no comment 15753016692242	Arabidopsis thaliana (02122019)colors8 no comment 15752836466582	Arabidopsis thaliana (29112019)colors7 no comment 15750451573188	Arabidopsis thaliana (29112019)colors6 no comment 15750430517459

organism?	select
comment?
tsv file?	browse
or data? Insert an example? Please consider!
cushioning?

gypsum_metagenome no comment 15756716074398	halite_2015_v1 (adapted by EB 06122019) no comment 15756710456367	halite_2015_v1 (adapted by EB 06122019) no comment 15756709434904	gypsum_metagenome (adapted by E 06122019) no comment 15756706933428	halite_2015_v1 (adapted by E 06122019) no comment 15756663964184
gypsum_metagenome (adapted by GM2 06122019) no comment 15756656292507	gypsum_metagenome no comment 15756655259434	kegg_cl no comment 15755414584050	human cells (adapted by RS 04082019) example_try 15755125463221	Arabidopsis thaliana (02122019)colors10 no comment 15753671461452

This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.

The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON GmbH.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.

The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:

Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.

Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.

Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.