bionic-vis

Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net

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Saccharomyces cerevisiae (Baker's yeast) test 15505654491314	Saccharomyces cerevisiae (Baker's yeast) test 15505654378720	Saccharomyces cerevisiae (Baker's yeast) test 15505648894058	Saccharomyces cerevisiae (Baker's yeast) test 15505642537724	Saccharomyces cerevisiae (Baker's yeast) 4B control R1 15502952889090
Saccharomyces cerevisiae (Baker's yeast) 4B control R1 15502952102851	Saccharomyces cerevisiae (Baker's yeast) no comment 15477307313853	Saccharomyces cerevisiae (Baker's yeast) no comment 15477305550552	Escherichia coli test 15430838384000	Saccharomyces cerevisiae (Baker's yeast) 16'_RNAseq 15426165532197

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Homo sapiens (Human) H-L FC1.5 15506831163480	Homo sapiens (Human) H-L FC1.5 15506772540694	Homo sapiens (Human) H-C FC1.5 15506659328797	Homo sapiens (Human) H-L FC1.5 15506648656614	Homo sapiens (Human) H-L FC1.5 15506633483792
Homo sapiens (Human) H-L FC1.5 15506425626304	Saccharomyces cerevisiae (Baker's yeast) test 15505646857142	Bacillus subtilis 168 (Hay bacillus) no comment 15505017152359	Homo sapiens (Human) H-C FC1.5 K- 15504903356736	Homo sapiens (Human) L-C FC1.5 K- 15504901497738

Before setting up an individual treemap template these issues need to be considered.
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World biomass with subdivision (adapted by YBO 13092016) (adapted by D 19022019) no comment 15506137716769	2016_SNAPT_default_all_small_ncRNAs no comment 15506116955064	Johan_Sec no comment 15500155248085	susMetSec no comment 15495722298824	testL (adapted by E1 07022019) (adapted by E1 07022019) no comment 15495608869458
testL (adapted by E 07022019) (adapted by E1 07022019) no comment 15495605719857	testL (adapted by E1 07022019) no comment 15495596890637	testL no comment 15495581692877	testL (adapted by E 07022019) (adapted by E 07022019) no comment 15495574525607	testL (adapted by E 07022019) no comment 15495571485083

organism?	select
comment?
tsv file?	browse
or data? Insert an example? Please consider!
cushioning?

leeo (adapted by L 08102018) 3 15504825016073	leeo no comment 15504821474025	leeo 3 15504817114074	leeo (adapted by L 08102018) no comment 15504815354548	Johan_Sec 137 sec 15500192938906
Johan_Sec 101 sec 15500190638420	susMetSec amp sta avg 15495735651468	susMetSec amp exp avg 15495735016514	susMetSec non-amp sta avg 15495734406720	susMetSec non-amp exp avg 15495730454917

This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.

The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON GmbH.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.

The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:

Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.

Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.

Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.