Bionic Visualizations
Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
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or data?
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cushioning?
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15507793891359
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15507786706160
eIF4B top 3000
Saccharomyces cerevisiae (Baker's yeast)
eIF4B top 3000
15507783648070
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15507783242332
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15507782468392
test
Saccharomyces cerevisiae (Baker's yeast)
test
15505654491314
test
Saccharomyces cerevisiae (Baker's yeast)
test
15505654378720
test
Saccharomyces cerevisiae (Baker's yeast)
test
15505648894058
test
Saccharomyces cerevisiae (Baker's yeast)
test
15505642537724
4B control R1
Saccharomyces cerevisiae (Baker's yeast)
4B control R1
15502952889090
organism?
comment?
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or data?
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cushioning?
no comment
Staphylococcus aureus COL
no comment
15532352097837
no comment
Escherichia coli K-12 MG1655
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15531254041075
no comment
Escherichia coli K-12 MG1655
no comment
15531247895227
H-L FC2
Homo sapiens (Human)
H-L FC2
15531151348891
10a
Homo sapiens (Human)
10a
15530951609493
no comment
Mus musculus (Mouse)
no comment
15530941466077
glucose 42 C
Escherichia coli K-12 MG1655
glucose 42 C
15529444092441
gal
Escherichia coli K-12 MG1655
gal
15529443344602
chemstat 0.12
Escherichia coli K-12 MG1655
chemstat 0.12
15529438346739
test
Homo sapiens (Human)
test
15529434897096
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
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edit tmd data?
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source?
db link?
comment?
user name?
user template previews
no comment
S.plymuthica_assignedKEGG
no comment
15531399788990
no comment
S.plymuthica
no comment
15531372919376
no comment
Johan_Met
no comment
15511192669576
no comment
Johan_Sec
no comment
15500155248085
no comment
susMetSec
no comment
15495722298824
no comment
testL (adapted by E1 07022019) (adapted by E1 07022019)
no comment
15495608869458
no comment
testL (adapted by E 07022019) (adapted by E1 07022019)
no comment
15495605719857
no comment
testL (adapted by E1 07022019)
no comment
15495596890637
no comment
testL
no comment
15495581692877
no comment
testL (adapted by E 07022019) (adapted by E 07022019)
no comment
15495574525607
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
Caulobacter crescentus NA1000 (KEGG and non-KEGG (Not Mapped)) (adapted by J 09112018)
no comment
15532079769397
no comment
S.plymuthica
no comment
15531390074810
no comment
S.plymuthica
no comment
15531389440428
no comment
S.plymuthica
no comment
15531386417549
no comment
Stenotrophomonas (adapted by HM 13112018)
no comment
15531158795729
no comment
11
no comment
15531076399521
no comment
Clostridium acetobutylicum ATCC 824 (adapted by JB 07042016)
no comment
15531076266031
glucose (measured) ab
Escherichia coli K-12 MG1655 (mitochondrial biogenesis - folding)
glucose (measured) ab
15529964152465
no comment
Mus musculus (adapted by SL 20151219)
no comment
15528339541995
no comment
leeo (adapted by L 08102018)
no comment
15524424700158
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON GmbH.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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