Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
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or data?
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cushioning?
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16202342259297
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16202334960047
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16202334774236
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16201550677040
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16201543637332
no comment
Homo sapiens (Human)
no comment
16195293623537
no comment
Homo sapiens (Human)
no comment
16184821308116
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16174767182241
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16174609312740
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16174605754082
organism?
comment?
tsv file?
browse
or data?
Insert an example?
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cushioning?
top100_skin
Homo sapiens (Human)
top100_skin
16203935070917
top100_lymph
Homo sapiens (Human)
top100_lymph
16203934614103
top100_cns
Homo sapiens (Human)
top100_cns
16203933670835
top100_breast
Homo sapiens (Human)
top100_breast
16203933283581
top100_all
Homo sapiens (Human)
top100_all
16203932522378
mid30_skin
Homo sapiens (Human)
mid30_skin
16203932343296
mid30_skin
Homo sapiens (Human)
mid30_skin
16203931995018
mid30_lymph
Homo sapiens (Human)
mid30_lymph
16203931271665
mid30_breast
Homo sapiens (Human)
mid30_breast
16203930926989
mid30_cns
Homo sapiens (Human)
mid30_cns
16203930637634
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
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source?
db link?
comment?
user name?
user template previews
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mar_animals_biomass
no comment
16203734951199
no comment
mar_biomass1
no comment
16203731741403
no comment
mar_biomass
no comment
16203722162072
no comment
ter_biomass_wcol
no comment
16203716988570
no comment
ter_animal_biomass_wcol1
no comment
16203703243047
no comment
ter_animal_biomass_wcol
no comment
16202967018164
no comment
ter_animal_biomass_wcol
no comment
16202966027388
no comment
ter_animal_biomass
no comment
16202946553208
no comment
MIP_guilds_wcol_habname
no comment
16197521456392
no comment
MIP_guilds_wcol
no comment
16196891805750
organism?
comment?
tsv file?
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or data?
Insert an example?
Please consider!
cushioning?
no comment
kegg_cl
no comment
16203781440046
no comment
mar_animals_biomass
no comment
16203738289540
no comment
mar_animals_biomass
no comment
16203738289539
no comment
mar_biomass1
no comment
16203734772876
no comment
ter_biomass_wcol
no comment
16203721972047
no comment
ter_animal_biomass_wcol1
no comment
16203716846800
no comment
ter_animal_biomass_wcol
no comment
16203702821892
no comment
kegg_cl
no comment
16203048248323
no comment
ter_animal_biomass_wcol
no comment
16202967833729
no comment
ter_animal_biomass
no comment
16202960028981
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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