bionic-vis

Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net

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user maps

Homo sapiens (Human) gc_pr 16063638945042	Homo sapiens (Human) gc_sd 16063599941700	Homo sapiens (Human) no comment 16057755922566	Homo sapiens (Human) no comment 16055255626580	Homo sapiens (Human) no comment 16039741456167
Homo sapiens (Human) 14m 5x 16034248340543	Homo sapiens (Human) 14m 1x 16034247995066	Homo sapiens (Human) 14m cont 16034237859586	Homo sapiens (Human) 6m 5x 16034237018287	Homo sapiens (Human) 6m 1x 16034236764499

organism?	select
comment?
tsv file?	browse
or data? Insert an example? Please consider!
cushioning?

Homo sapiens (Human) no comment 16069291632804	Homo sapiens (Human) no comment 16069289072634	Homo sapiens (Human) no comment 16069284836971	Homo sapiens (Human) no comment 16069281809291	Homo sapiens (Human) no comment 16069279512574
Homo sapiens (Human) no comment 16069275904614	Homo sapiens (Human) no comment 16069275521144	Homo sapiens (Human) no comment 16069272142721	Homo sapiens (Human) no comment 16069265632665	Homo sapiens (Human) no comment 16069261536216

Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?	browse
edit tmd data? Insert an example?	text tree
source?
db link?
comment?
user name?

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user template previews

Test.Cd_Jm no comment 16069289939933	C.d. 3 _ colours (adapted by L 29112020) test kegg link 16066755924224	global water withdrawal estimated global water withdrawals 16041110084120	Cutibacterium species 201011-8 (adapted by I 11102020) Positions amended 16023785130108	Cutibacterium species 201011-7 (adapted by I 11102020) Position amended 16023775926801
Cutibacterium species 201011-6 (adapted by I 11102020) Colors adjusted 16023765943099	AD_COG_Metabolism_1 (adapted by A 09102020) no comment 16022497870330	AD_Cog_tax_test4 no comment 16022475435333	Cutibacterium species 201009 (adapted by I 09102020) Real data 16022105902763	SC-hm-GFP5 no comment 16021447848872

organism?	select
comment?
tsv file?	browse
or data? Insert an example? Please consider!
cushioning?

Test.Cd_Jm no comment 16069293996273	Corynebacterium diphtheriae NCTC13129 - KEGG BRITE and ORTHOLOGY no comment 16069290198190	C.d. 3 _ colours (adapted by L 29112020) no comment 16069187066608	C.d. 3 _ colours (adapted by L 29112020) no comment 16069183698262	C.d. 3 _ colours (adapted by L 29112020) no comment 16069176492117
C.d. 3 _ colours (adapted by L 29112020) no comment 16069171569863	C.d. 3 _ colours no comment 16069165904691	C.d. 3 _ colours no comment 16062988856583	C.d. 3 _ colours no comment 16057167669263	C.d. 3 _ colours no comment 16057137624110

This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.

The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.

The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:

Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.

Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.

Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.

Bionic Visualizations