Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
Homo sapiens (Human)
no comment
16146026613745
no comment
Homo sapiens (Human)
no comment
16143346771813
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16130550516164
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16130547693815
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16130547436915
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16130546315398
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16130544251443
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16130543678648
gc_pr
Homo sapiens (Human)
gc_pr
16063638945042
gc_sd
Homo sapiens (Human)
gc_sd
16063599941700
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
Escherichia coli K-12 MG1655
no comment
16146337942232
no comment
Mus musculus (Mouse)
no comment
16146008315246
After event
Homo sapiens (Human)
After event
16145032379388
Before immune therapy
Homo sapiens (Human)
Before immune therapy
16145030919851
no comment
Rattus norvegicus (Rat)
no comment
16144090214765
R-frac
Homo sapiens (Human)
R-frac
16143590898511
M-frac
Homo sapiens (Human)
M-frac
16143484355756
no comment
Homo sapiens (Human)
no comment
16143341947187
no comment
Mus musculus (Mouse)
no comment
16142908045964
no comment
Mus musculus (Mouse)
no comment
16142883482637
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
browse
edit tmd data?
Insert an example?
source?
db link?
comment?
user name?
user template previews
no comment
E coli Metabolite Map (adapted by D 01032021)
no comment
16145893171391
Selongatus
Selongatus (adapted by A 07022021)
Selongatus
16126856037795
no comment
NCTC_ SA
no comment
16123630127211
no comment
M024H_PROTEOHEATMAP
no comment
16118290770449
no comment
M04H_PROTEOHEATMAP
no comment
16118287858244
no comment
M04H_ALLIN (adapted by LM 28012021)
no comment
16117970350933
no comment
M024H_ALLIN (adapted by LM 28012021)
no comment
16117955790502
no comment
NCBI (adapted by T 20012021)
no comment
16111791100672
S elongatus
SE7942
S elongatus
16098817055840
adapted JM 05012021
Corynebacterium diphtheriae NCTC13129
adapted JM 05012021
16098524762981
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
Sc_v2_hm_GFP
no comment
16141217361292
no comment
SC-hm-1
no comment
16141216945902
AC_36
leeo8
AC_36
16140881931116
AC_24
leeo8
AC_24
16140881556543
36
leeo8
36
16132026678964
24
leeo8
24
16128616055791
up2x
leeo8
up2x
16128615319990
down2x
leeo8
down2x
16128612111128
down2x
leeo8
down2x
16128609375087
no comment
leeo8
no comment
16128609145063
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
Privacy Policy