Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
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tsv file?
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or data?
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Please consider!
cushioning?
PP_dbAAvsPP_dbTA_down
Mus musculus (Mouse)
PP_dbAAvsPP_dbTA_down
17645736873765
DP_mAAvsPP_mAA_down
Mus musculus (Mouse)
DP_mAAvsPP_mAA_down
17645714101919
DP_dbvsPP_db_down
Mus musculus (Mouse)
DP_dbvsPP_db_down
17645710096301
DP_dbvsDP_m_up
Mus musculus (Mouse)
DP_dbvsDP_m_up
17645710096300
DP_mvsPP_m_up
Mus musculus (Mouse)
DP_mvsPP_m_up
17645709092068
DP_mvsPP_m_down
Mus musculus (Mouse)
DP_mvsPP_m_down
17645709047111
DP_mTAvsPP_mTA_up
Mus musculus (Mouse)
DP_mTAvsPP_mTA_up
17645709004176
DP_mTAvsPP_mTA_down
Mus musculus (Mouse)
DP_mTAvsPP_mTA_down
17645708966223
DP_mAAvsPP_mAA_up
Mus musculus (Mouse)
DP_mAAvsPP_mAA_up
17645708923821
DP_mAAvsDP_mTA_up
Mus musculus (Mouse)
DP_mAAvsDP_mTA_up
17645708880845
organism?
comment?
tsv file?
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or data?
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Please consider!
cushioning?
C2-normalized
Escherichia coli K-12 MG1655
C2-normalized
17652901463623
S2-normalized
Escherichia coli K-12 MG1655
S2-normalized
17652900650319
OIS8
Homo sapiens (Human)
OIS8
17652641358772
OIS4
Homo sapiens (Human)
OIS4
17652640784632
OIS2
Homo sapiens (Human)
OIS2
17652640149207
OIS0
Homo sapiens (Human)
OIS0
17652639345026
no comment
Homo sapiens (Human)
no comment
17652518046968
no comment
Homo sapiens (Human)
no comment
17652510329545
xxx
Homo sapiens (Human)
xxx
17651958791873
no comment
Escherichia coli K-12 MG1655
no comment
17651921103364
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
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user template previews
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17649616928659
no comment
cauris_calbicans9
no comment
17648075763474
no comment
cauris_calbicans9
no comment
17648075763473
no comment
cauris_calbicans_8
no comment
17648013622987
no comment
cauris_calbicans_7
no comment
17647989347072
no comment
cauris_calbicans_7
no comment
17647989347071
no comment
cauris_calbicans_2
no comment
17647946467966
no comment
cauris_calbicans
no comment
17647940931122
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
kegg_cl
no comment
17649602553505
no comment
kegg_cl
no comment
17649602211270
cloud_test_9
cauris_calbicans9
cloud_test_9
17648117830468
shell_test_9
cauris_calbicans9
shell_test_9
17648117545825
core_test_9
cauris_calbicans9
core_test_9
17648117326009
core_test_8
cauris_calbicans_8
core_test_8
17648109248944
cloud_test_7
cauris_calbicans_7
cloud_test_7
17648013449288
shell_test_7
cauris_calbicans_7
shell_test_7
17648013121879
shell_test_7
cauris_calbicans_7
shell_test_7
17648013121878
core_test_7
cauris_calbicans_7
core_test_7
17648012925917
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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