Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
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or data?
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Please consider!
cushioning?
contDT-contT lungs up
Mus musculus (Mouse)
contDT-contT lungs up
17886928839327
contDT-contT lungs tp
Mus musculus (Mouse)
contDT-contT lungs tp
17886928340407
no comment
Homo sapiens (Human)
no comment
17883650433019
no comment
Mus musculus (Mouse)
no comment
17860267929727
no comment
Mus musculus (Mouse)
no comment
17860267194167
no comment
Mus musculus (Mouse)
no comment
17860267194166
down regulated het
Mus musculus (Mouse)
down regulated het
17860165894803
no comment
Mus musculus (Mouse)
no comment
17860158868493
upregulated het
Mus musculus (Mouse)
upregulated het
17860156154728
13LNFU_I_pos_II_neg_IFN_3
Homo sapiens (Human)
13LNFU_I_pos_II_neg_IFN_3
17858514363861
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
Detrained-contT lungs up
Mus musculus (Mouse)
Detrained-contT lungs up
17887792561985
Detrained-contT lungs up
Mus musculus (Mouse)
Detrained-contT lungs up
17887791713728
Detrained-controlT down
Mus musculus (Mouse)
Detrained-controlT down
17887791192651
contDT-contT lungs down
Mus musculus (Mouse)
contDT-contT lungs down
17887791066437
contDT-contT lungs up
Mus musculus (Mouse)
contDT-contT lungs up
17887783603995
no comment
Mus musculus (Mouse)
no comment
17887744139728
no comment
Mus musculus (Mouse)
no comment
17887742735896
no comment
no comment
17887742330968
no comment
Mus musculus (Mouse)
no comment
17887020878156
no comment
Mus musculus (Mouse)
no comment
17886956909702
Before setting up an individual treemap template these issues need to be considered.
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db link?
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user name?
user template previews
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17885076546151
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Donte Zook
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17884917858176
LaSeedMitoProject + Ditz; Colors Lvl1
LA Hufnagel SeedMito At ColorsLvl1
LaSeedMitoProject + Ditz; Colors Lvl1
17865220638420
no comment
1071_simple
no comment
17860223426444
no comment
e1071 (adapted by J 06082026)
no comment
17860215493518
no color code
LA Hufnagel CA_5_NoColor
no color code
17859126795388
AGTH-Lvl
LA Hufnagel CA_5
AGTH-Lvl
17854837522324
no comment
Mus musculus UP
no comment
17852926949451
CDAHFD-specific upregulated genes from mouse liver snRNA-seq.<br />Polygon area is weighted by differential-expression score.
Mus musculus (adapted by W 29072026)
CDAHFD-specific upregulated genes from mouse liver snRNA-seq.
Polygon area is weighted by differential-expression score.
17852902129752
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
At Fuchs
LA Hufnagel SeedMito At ColorsLvl1
At Fuchs
17866053152239
At Seed Cold
LA Hufnagel SeedMito At ColorsLvl1
At Seed Cold
17866052267857
La Leaf
LA Hufnagel SeedMito At ColorsLvl1
La Leaf
17866051349959
La 24h RT
LA Hufnagel SeedMito At ColorsLvl1
La 24h RT
17866050765101
La 24h Cold
LA Hufnagel SeedMito At ColorsLvl1
La 24h Cold
17866050432243
gp7_sig
1071_simple
gp7_sig
17860286964833
ctrl_sig
1071_simple
ctrl_sig
17860240619044
gp7
1071_simple
gp7
17860240410137
ctrl
1071_simple
ctrl
17860240168107
no comment
e1071 (adapted by J 06082026)
no comment
17860223119288
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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