Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
upregulated
Homo sapiens (Human)
upregulated
17418892703253
downregulated
Homo sapiens (Human)
downregulated
17418890706039
stabilized
Homo sapiens (Human)
stabilized
17418887437891
no comment
Homo sapiens (Human)
no comment
17418870636933
no comment
Mus musculus (Mouse)
no comment
17418664155454
no comment
Mus musculus (Mouse)
no comment
17418651645852
no comment
Mus musculus (Mouse)
no comment
17413124230919
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
17411552462618
no comment
Mus musculus (Mouse)
no comment
17405599728533
liver up
Mus musculus (Mouse)
liver up
17374590799067
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
Homo sapiens (Human)
no comment
17424100466466
no comment
Homo sapiens (Human)
no comment
17424097963760
no comment
Homo sapiens (Human)
no comment
17424097687949
high in co
Homo sapiens (Human)
high in co
17423999554466
high in hydroxy
Homo sapiens (Human)
high in hydroxy
17423999069488
high in bortz
Homo sapiens (Human)
high in bortz
17423998214622
control
Homo sapiens (Human)
control
17423997987723
no comment
Homo sapiens (Human)
no comment
17423881574461
no comment
Homo sapiens (Human)
no comment
17423803411615
no comment
Homo sapiens (Human)
no comment
17423398900119
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
browse
edit tmd data?
Insert an example?
source?
db link?
comment?
user name?
user template previews
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17424278622521
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17424265242116
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17423739881678
no comment
KMAR practice map
no comment
17423237850784
no comment
KMAR practice
no comment
17422578916987
no comment
practice map real data
no comment
17422577980226
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Kathi Koehn
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17422381886135
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Rogelio Rust
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17421856989379
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Michael M
Hey there,

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17421234867960
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Klaus Marvin
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17421140189865
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
Homo sapiens (Human) (version 2.0) (adapted by LM 26122020)
no comment
17422385907092
no comment
Homo sapiens (Human) (version 2.0) (adapted by LM 26122020)
no comment
17422383874461
PURE_extract
Escherichia coli MG1655
PURE_extract
17422142727304
no comment
11 (adapted by E 13032025)
no comment
17418764740171
M9_data_20h
11 (adapted by H 13012025)
M9_data_20h
17418540726659
M9_data_6h
11 (adapted by H 13012025)
M9_data_6h
17418540493624
M9_data_2h
11 (adapted by H 13012025)
M9_data_2h
17418540198312
M4_data_20h
11 (adapted by H 13012025)
M4_data_20h
17418539923821
M4_data_6h
11 (adapted by H 13012025)
M4_data_6h
17418539777194
M4_data_2h
11 (adapted by H 13012025)
M4_data_2h
17418539320442
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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