Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
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or data?
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cushioning?
no comment
Homo sapiens (Human)
no comment
17793877177166
no comment
Homo sapiens (Human)
no comment
17792728166147
no comment
Homo sapiens (Human)
no comment
17792728166146
no comment
Homo sapiens (Human)
no comment
17786796177771
no comment
Homo sapiens (Human)
no comment
17769361068594
no comment
Homo sapiens (Human)
no comment
17760880726891
no comment
Homo sapiens (Human)
no comment
17750538708049
no comment
Homo sapiens (Human)
no comment
17750537994498
no comment
Homo sapiens (Human)
no comment
17750515487678
no comment
Homo sapiens (Human)
no comment
17750515382079
organism?
comment?
tsv file?
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or data?
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final genes
Homo sapiens (Human)
final genes
17810917688354
trial.
Homo sapiens (Human)
trial.
17810894640159
no comment
Homo sapiens (Human)
no comment
17810893939932
no comment
Aliivibrio fischeri ES114
no comment
17810821244708
no comment
Aliivibrio fischeri ES114
no comment
17810821244707
no comment
Homo sapiens (Human)
no comment
17810812330746
no comment
Mus musculus (Mouse)
no comment
17810049155360
map
Mus musculus (Mouse)
map
17810045309907
no comment
Homo sapiens (Human)
no comment
17809936654766
no comment
Escherichia coli K-12 MG1655
no comment
17809865575676
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
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source?
db link?
comment?
user name?
user template previews
no comment
24co june-u
no comment
17811152047262
no comment
_CB_treemap_20260529_v4_005
no comment
17803312173384
no comment
_CB_treemap_20260529_v3_005
no comment
17803052026716
no comment
_CB_treemap_20260601_v2_005
no comment
17803043234119
no comment
_CB_treemap_20260529_v1_005
no comment
17800601788877
no comment
S-molecules
no comment
17799806677952
no comment
_metaP_20260527_annotatev1
no comment
17798788434374
test1
_metaP_20260526_005
test1
17797957023085
no comment
auris_lipids
no comment
17789977228547
Annotationfile2025
Blueberry_Jhonny_CA_UoC_28042026_IDs (adapted by C 28042026) (adapted by C 28042026)
Annotationfile2025
17773666157018
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
Fixed 1st draft
Caulobacter crescentus NA1000 (V5 file KEGG and non-KEGG (Not Mapped)) (adapted by J 09112018) (adapted by J 13112018) (adapted by J 14112018) (adapted by J 19112018)
Fixed 1st draft
17806871056019
no comment
Caulobacter crescentus NA1000 (V5 file KEGG and non-KEGG (Not Mapped)) (adapted by J 09112018) (adapted by J 13112018) (adapted by J 14112018) (adapted by J 19112018)
no comment
17806797217233
no comment
Caulobacter crescentus NA1000 (V5 file KEGG and non-KEGG (Not Mapped)) (adapted by J 09112018) (adapted by J 13112018) (adapted by J 14112018) (adapted by J 19112018)
no comment
17806793534849
no comment
Caulobacter crescentus NA1000 (V5 file KEGG and non-KEGG (Not Mapped)) (adapted by J 09112018) (adapted by J 13112018) (adapted by J 14112018) (adapted by J 19112018)
no comment
17806793534848
no comment
Caulobacter crescentus NA1000 (V5 file KEGG and non-KEGG (Not Mapped)) (adapted by J 09112018) (adapted by J 13112018) (adapted by J 14112018) (adapted by J 19112018)
no comment
17806789483430
no comment
Caulobacter crescentus NA1000 (V5 file KEGG and non-KEGG (Not Mapped)) (adapted by J 09112018) (adapted by J 13112018) (adapted by J 14112018) (adapted by J 19112018)
no comment
17805836010390
binnedORF100
_CB_treemap_20260529_v4_005
binnedORF100
17804142818456
no comment
_CB_treemap_20260529_v4_005
no comment
17803313205154
MAGORF
_CB_treemap_20260529_v3_005
MAGORF
17803087843737
3SeqOFF
_CB_treemap_20260529_v3_005
3SeqOFF
17803072643689
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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