bionic-vis

Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net

version 1.0
2.0
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user maps

14m 5x 16034248340543	14m 1x 16034247995066	14m cont 16034237859586	6m 5x 16034237018287	6m 1x 16034236764499
6m cont 16034236305799	3m 5x 16034234759387	3m 1x 16034224552041	3m cont 16034224247670	UP 16022319418520

organism?	select
comment?
tsv file?	browse
or data? Insert an example? Please consider!
cushioning?

no comment 16035968643323	no comment 16035967339761	no comment 16035967339760	no comment 16035964465187	no comment 16035639485092
Cell factor 16035189701575	no comment 16035002652172	no comment 16034983546472	no comment 16034982236097	no comment 16034449125606

Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?	browse
edit tmd data? Insert an example?	text tree
source?
db link?
comment?
user name?

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user template previews

Positions amended 16023785130108	Position amended 16023775926801	Colors adjusted 16023765943099	no comment 16022497870330	no comment 16022475435333
Real data 16022105902763	no comment 16021447848872	no comment 16021414539865	no comment 16021399775982	no comment 16021370713195

organism?	select
comment?
tsv file?	browse
or data? Insert an example? Please consider!
cushioning?

no comment 16033898343416	no comment 16024708595356	no comment 16024706922011	no comment 16024698416616	C acnes E1S 16023794275548
C acnes I x 3 16023784749295	C acnes E2S 16023784377923	C acnes E2S 16023784020406	C acnes E1S 16023781559094	C acnes I x 3 16023775481051

This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.

The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.

The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:

Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.

Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.

Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.

Bionic Visualizations