bionic-vis

Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net

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Saccharomyces cerevisiae (Baker's yeast) Ssd1 control R1 unique 15548883733975	Saccharomyces cerevisiae (Baker's yeast) Hek2 control R1 unique 15548882541973	Saccharomyces cerevisiae (Baker's yeast) Mrn1 HS R1 unique 15548882375816	Saccharomyces cerevisiae (Baker's yeast) Mrn1 GE R2 unique 15548881880461	Saccharomyces cerevisiae (Baker's yeast) Mrn1 GE R1 15548881692880
Saccharomyces cerevisiae (Baker's yeast) Mrn1 mock R1 unique 15548881476576	Saccharomyces cerevisiae (Baker's yeast) Mrn1 control R2 unique 15548880916698	Saccharomyces cerevisiae (Baker's yeast) Mrn1 control R1 unique 15548880838171	Saccharomyces cerevisiae (Baker's yeast) Mrn1 control R2 15548727444403	Saccharomyces cerevisiae (Baker's yeast) no comment 15547981292545

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Arabidopsis thaliana (Mousear cress) no comment 15559462212532	Aliivibrio fischeri ES114 no comment 15559325772793	Homo sapiens (Human) no comment 15559143388242	Mus musculus (Mouse) ibaq_bulk 15558556013761	Rattus norvegicus (Rat) no comment 15556472249807
Homo sapiens (Human) 3xFU_FC 15555754097519	Homo sapiens (Human) no comment 15555747369194	Homo sapiens (Human) 3xFU_downFC 15555747301349	Homo sapiens (Human) 3xFU_up_FC 15555747016202	Homo sapiens (Human) no comment 15555744324931

Before setting up an individual treemap template these issues need to be considered.
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Saccharomyces cerevisiae S288C (ppaper by TRA) no comment 15556208997026	Pichia pastoris CBS7435 (ppaper by TRA) no comment 15556208060061	Arthropods 15-4 19:16 (adapted by A 15042019) no comment 15553444803712	Arthropode mass 3 15-4 no comment 15553441547337	biomass (adapted by A 15042019) no comment 15553428745868
Insect mass 2 no comment 15549845893955	Insect mass no comment 15549829018269	Arthropode mass 3 no comment 15549824635173	Arthropode mass 2 no comment 15549686222825	Arthropoda (adapted by A 11042019) no comment 15549663661434

organism?	select
comment?
tsv file?	browse
or data? Insert an example? Please consider!
cushioning?

Saccharomyces cerevisiae S288C (ppaper by TRA) wei_chx_t 15560453040935	Pichia pastoris CBS7435 (ppaper by TRA) tra_chx_t_plusES 15560452786996	Pichia pastoris CBS7435 (ppaper by TRA) tra_chx_t_negES 15560452359105	Pichia pastoris CBS7435 (ppaper by TRA) tra_chx_t_negES 15560447455844	Pichia pastoris CBS7435 (ppaper by TRA) tra_chx_t_negES 15560446710406
Arthropods 15-4 19:16 (adapted by A 15042019) no comment 15560016834658	Arthropods 15-4 19:16 (adapted by A 15042019) no comment 15560016065288	Saccharomyces cerevisiae S288C (ppaper by TRA) wei_chx_t 15559049706730	Saccharomyces cerevisiae S288C (ppaper by TRA) wei_t_chx 15557008609029	Pichia pastoris CBS7435 (ppaper by TRA) tra_t_chx 15556222255174

This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.

The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON GmbH.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.

The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:

Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.

Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.

Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.