bionic-vis

Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net

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Saccharomyces cerevisiae (Baker's yeast) no comment 15507793891359	Saccharomyces cerevisiae (Baker's yeast) no comment 15507786706160	Saccharomyces cerevisiae (Baker's yeast) eIF4B top 3000 15507783648070	Saccharomyces cerevisiae (Baker's yeast) no comment 15507783242332	Saccharomyces cerevisiae (Baker's yeast) no comment 15507782468392
Saccharomyces cerevisiae (Baker's yeast) test 15505654491314	Saccharomyces cerevisiae (Baker's yeast) test 15505654378720	Saccharomyces cerevisiae (Baker's yeast) test 15505648894058	Saccharomyces cerevisiae (Baker's yeast) test 15505642537724	Saccharomyces cerevisiae (Baker's yeast) 4B control R1 15502952889090

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Escherichia coli K-12 MG1655 no comment 15533304439029	Escherichia coli K-12 MG1655 no comment 15533298536206	Staphylococcus aureus COL no comment 15532352097837	Escherichia coli K-12 MG1655 no comment 15531254041075	Escherichia coli K-12 MG1655 no comment 15531247895227
Homo sapiens (Human) H-L FC2 15531151348891	Homo sapiens (Human) 10a 15530951609493	Mus musculus (Mouse) no comment 15530941466077	Escherichia coli K-12 MG1655 glucose 42 C 15529444092441	Escherichia coli K-12 MG1655 gal 15529443344602

Before setting up an individual treemap template these issues need to be considered.
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S.plymuthica_assignedKEGG no comment 15531399788990	S.plymuthica no comment 15531372919376	Johan_Met no comment 15511192669576	Johan_Sec no comment 15500155248085	susMetSec no comment 15495722298824
testL (adapted by E1 07022019) (adapted by E1 07022019) no comment 15495608869458	testL (adapted by E 07022019) (adapted by E1 07022019) no comment 15495605719857	testL (adapted by E1 07022019) no comment 15495596890637	testL no comment 15495581692877	testL (adapted by E 07022019) (adapted by E 07022019) no comment 15495574525607

organism?	select
comment?
tsv file?	browse
or data? Insert an example? Please consider!
cushioning?

Caulobacter crescentus NA1000 (KEGG and non-KEGG (Not Mapped)) (adapted by J 09112018) no comment 15532079769397	S.plymuthica no comment 15531390074810	S.plymuthica no comment 15531389440428	S.plymuthica no comment 15531386417549	Stenotrophomonas (adapted by HM 13112018) no comment 15531158795729
11 no comment 15531076399521	Clostridium acetobutylicum ATCC 824 (adapted by JB 07042016) no comment 15531076266031	Escherichia coli K-12 MG1655 (mitochondrial biogenesis - folding) glucose (measured) ab 15529964152465	Mus musculus (adapted by SL 20151219) no comment 15528339541995	leeo (adapted by L 08102018) no comment 15524424700158

This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.

The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON GmbH.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.

The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:

Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.

Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.

Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.