Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
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or data?
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Please consider!
cushioning?
lll
Homo sapiens (Human)
lll
15919551158069
no comment
Mus musculus (Mouse)
no comment
15887635317239
no comment
Mus musculus (Mouse)
no comment
15879070433244
cuphal
Homo sapiens (Human)
cuphal
15863750360592
cupclz
Homo sapiens (Human)
cupclz
15863749174862
cupcbd
Homo sapiens (Human)
cupcbd
15863746020601
cupbenz
Homo sapiens (Human)
cupbenz
15863742848851
Cup_unicatabela
Homo sapiens (Human)
Cup_unicatabela
15863739439420
Cup_unicatabela
Homo sapiens (Human)
Cup_unicatabela
15863739439419
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15863252677380
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
Arabidopsis thaliana (Mousear cress)
no comment
15940380974795
E-frak
Homo sapiens (Human)
E-frak
15939715117612
nos
Homo sapiens (Human)
nos
15939501822270
no comment
Bacillus subtilis 168 (Hay bacillus)
no comment
15938315410360
no comment
Homo sapiens (Human)
no comment
15936048639771
no comment
Homo sapiens (Human)
no comment
15936046029630
no comment
Homo sapiens (Human)
no comment
15936045685886
no comment
Homo sapiens (Human)
no comment
15936043996586
no comment
Homo sapiens (Human)
no comment
15936036160656
no comment
Homo sapiens (Human)
no comment
15936025199250
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
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edit tmd data?
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source?
db link?
comment?
user name?
user template previews
no comment
FMT_human_donors_GO_capotal_letters
no comment
15927754624478
no comment
FMT_human_donors_GO
no comment
15927729988058
no comment
KO_treemap_keggModules_sdahal_101 (adapted by S 31052020)
no comment
15909731352766
treemap with all my KO IDs mapped
KO_treemap105_keggModules_sdahal (adapted by S 18052020)
treemap with all my KO IDs mapped
15898321213677
treemap with all my KO IDs mapped.
KO_treemap104_keggModules_sdahal (adapted by S 18052020)
treemap with all my KO IDs mapped.
15898313204922
treemap with all the KOs in my data mapped to KEGG modules
KO_treemap101_keggModules_sdahal_test102 (adapted by S 18052020)
treemap with all the KOs in my data mapped to KEGG modules
15898291798858
no comment
Methanogen_wg_full (adapted by G 17052020)
no comment
15897611738945
no comment
Methanogen_wg1 (adapted by G 17052020)
no comment
15897519828832
no comment
Methanogen_wg (adapted by G 17052020)
no comment
15897324164489
no comment
Methanogen_wg (adapted by G 16052020)
no comment
15896653148712
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
Mammals unique (adapted by EK 06112019) (adapted by EK 06112019) (adapted by EK 09122019)
no comment
15933416704566
no comment
Mammals unique (adapted by EK 06112019) (adapted by EK 06112019) (adapted by EK 09122019)
no comment
15933416559531
no comment
Mammals unique (adapted by EK 06112019) (adapted by EK 06112019) (adapted by EK 09122019)
no comment
15933412065107
no comment
Mammals unique (adapted by EK 06112019) (adapted by EK 06112019) (adapted by EK 09122019)
no comment
15933405841685
no comment
Mammals unique (adapted by EK 06112019) (adapted by EK 06112019) (adapted by EK 09122019)
no comment
15933405841684
no comment
Mammals unique (adapted by EK 06112019) (adapted by EK 06112019) (adapted by EK 09122019)
no comment
15933405841683
no comment
Mammals unique (adapted by EK 06112019) (adapted by EK 06112019) (adapted by EK 09122019)
no comment
15933405524469
Donor2_GO_cushion_capital
FMT_human_donors_GO_capotal_letters
Donor2_GO_cushion_capital
15927761974803
Donor1_GO_FMT_cushion_capital
FMT_human_donors_GO_capotal_letters
Donor1_GO_FMT_cushion_capital
15927760229988
Donor1_GO_FMT_cushion
FMT_human_donors_GO
Donor1_GO_FMT_cushion
15927753361751
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON GmbH.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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