Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16174767182241
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16174609312740
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16174605754082
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16174601775727
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16174510138258
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16174508723747
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16174505504674
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16174499533814
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16174495015843
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
16174492349188
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
Danio rerio (Zebrafish)
no comment
16181724358329
no comment
Danio rerio (Zebrafish)
no comment
16181714480130
no comment
Bos taurus (Cow, Cattle)
no comment
16180451773656
no comment
Bos taurus (Cow, Cattle)
no comment
16180445982866
no comment
Homo sapiens (Human)
no comment
16180445626713
no comment
Staphylococcus aureus N315
no comment
16179987257791
example
Streptomyces coelicolor
example
16179986441809
no comment
Homo sapiens (Human)
no comment
16179877500971
no comment
Homo sapiens (Human)
no comment
16179867971317
no comment
Homo sapiens (Human)
no comment
16179864448919
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
browse
edit tmd data?
Insert an example?
source?
db link?
comment?
user name?
user template previews
test
cd_ISS3319_2
test
16164168824891
no comment
Plankton functional groups 4 (adapted by F 20032021)
no comment
16162407734522
adapted from the reference proteome NCTC13129 and publication from Möller et al., 2020 (https://www.mdpi.com/2227-7382/8/3/19)
Corynebacterium silvaticum W25_final_JM
adapted from the reference proteome NCTC13129 and publication from Möller et al., 2020 (https://www.mdpi.com/2227-7382/8/3/19)
16161437280857
Used as reference: https://doi.org/10.3390/proteomes8030019
Corynebacterium silvaticum W25 (adapted by J 18032021)_revised
Used as reference: https://doi.org/10.3390/proteomes8030019
16160849466705
no comment
E coli Metabolite Map (adapted by D 01032021)
no comment
16145893171391
Selongatus
Selongatus (adapted by A 07022021)
Selongatus
16126856037795
no comment
NCTC_ SA
no comment
16123630127211
no comment
M024H_PROTEOHEATMAP
no comment
16118290770449
no comment
M04H_PROTEOHEATMAP
no comment
16118287858244
no comment
M04H_ALLIN (adapted by LM 28012021)
no comment
16117970350933
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
kegg_cl
no comment
16176173645739
no comment
kegg_cl
no comment
16176173123830
no comment
kegg_cl
no comment
16176126547745
no comment
kegg_cl
no comment
16176119419748
no comment
kegg_cl
no comment
16176115971906
no comment
kegg_cl
no comment
16176111911524
no comment
kegg_cl
no comment
16176106173069
no comment
kegg_km
no comment
16176104762069
no comment
kegg_cl
no comment
16176097536358
no comment
kegg_cl
no comment
16176093537130
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
Privacy Policy