Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
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tsv file?
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cushioning?
no comment
Homo sapiens (Human)
no comment
17883650433019
no comment
Mus musculus (Mouse)
no comment
17860267929727
no comment
Mus musculus (Mouse)
no comment
17860267194167
no comment
Mus musculus (Mouse)
no comment
17860267194166
down regulated het
Mus musculus (Mouse)
down regulated het
17860165894803
no comment
Mus musculus (Mouse)
no comment
17860158868493
upregulated het
Mus musculus (Mouse)
upregulated het
17860156154728
13LNFU_I_pos_II_neg_IFN_3
Homo sapiens (Human)
13LNFU_I_pos_II_neg_IFN_3
17858514363861
S16 treatment
Homo sapiens (Human)
S16 treatment
17849986556579
S15(3) treatment
Homo sapiens (Human)
S15(3) treatment
17849984528162
organism?
comment?
tsv file?
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cushioning?
no comment
Homo sapiens (Human)
no comment
17883659571401
no comment
Homo sapiens (Human)
no comment
17883605689253
no comment
Homo sapiens (Human)
no comment
17883604736323
no comment
Homo sapiens (Human)
no comment
17883582575037
no comment
Homo sapiens (Human)
no comment
17883581788313
z
Homo sapiens (Human)
z
17883563349646
wt
Homo sapiens (Human)
wt
17883558568330
no comment
Homo sapiens (Human)
no comment
17883554274407
no comment
Homo sapiens (Human)
no comment
17883554274406
no comment
Homo sapiens (Human)
no comment
17883553750287
Before setting up an individual treemap template these issues need to be considered.
treemap name?
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user template previews
LaSeedMitoProject + Ditz; Colors Lvl1
LA Hufnagel SeedMito At ColorsLvl1
LaSeedMitoProject + Ditz; Colors Lvl1
17865220638420
no comment
1071_simple
no comment
17860223426444
no comment
e1071 (adapted by J 06082026)
no comment
17860215493518
no color code
LA Hufnagel CA_5_NoColor
no color code
17859126795388
AGTH-Lvl
LA Hufnagel CA_5
AGTH-Lvl
17854837522324
no comment
Mus musculus UP
no comment
17852926949451
CDAHFD-specific upregulated genes from mouse liver snRNA-seq.<br />Polygon area is weighted by differential-expression score.
Mus musculus (adapted by W 29072026)
CDAHFD-specific upregulated genes from mouse liver snRNA-seq.
Polygon area is weighted by differential-expression score.
17852902129752
no comment
Pseudomonas putida KT2440 270726b
no comment
17851526166165
no comment
Pseudomonas putida KT2440 27072026
no comment
17851517835778
no comment
Pseudomonas putida KT2440 150726b (adapted by S 20072026)
no comment
17845395085659
organism?
comment?
tsv file?
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or data?
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cushioning?
At Fuchs
LA Hufnagel SeedMito At ColorsLvl1
At Fuchs
17866053152239
At Seed Cold
LA Hufnagel SeedMito At ColorsLvl1
At Seed Cold
17866052267857
La Leaf
LA Hufnagel SeedMito At ColorsLvl1
La Leaf
17866051349959
La 24h RT
LA Hufnagel SeedMito At ColorsLvl1
La 24h RT
17866050765101
La 24h Cold
LA Hufnagel SeedMito At ColorsLvl1
La 24h Cold
17866050432243
gp7_sig
1071_simple
gp7_sig
17860286964833
ctrl_sig
1071_simple
ctrl_sig
17860240619044
gp7
1071_simple
gp7
17860240410137
ctrl
1071_simple
ctrl
17860240168107
no comment
e1071 (adapted by J 06082026)
no comment
17860223119288
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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