bionic-vis

Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net

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Arabidopsis thaliana (Mousear cress) no comment 15966306738938	Saccharomyces cerevisiae (Baker's yeast) no comment 15961840732190	Homo sapiens (Human) no comment 15954117291633	Homo sapiens (Human) no comment 15954116992559	Saccharomyces cerevisiae (Baker's yeast) no comment 15949362870405
Saccharomyces cerevisiae (Baker's yeast) test5 15947246229936	Homo sapiens (Human) lll 15919551158069	Mus musculus (Mouse) no comment 15887635317239	Mus musculus (Mouse) no comment 15879070433244	Homo sapiens (Human) cuphal 15863750360592

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Homo sapiens (Human) SK-1 15967177428253	Aliivibrio fischeri ES114 no comment 15967177417942	Staphylococcus aureus COL no comment 15966849713066	Staphylococcus aureus COL no comment 15966847423495	Staphylococcus aureus COL Downregulated clip Day3/Day1 15966845711420
Staphylococcus aureus COL no comment 15966844396230	Staphylococcus aureus COL Upregulated in clip Day3 to Day 1 15966798677844	Staphylococcus aureus COL no comment 15966605080289	Staphylococcus aureus COL Upregulated proteins WT D3/D1 15966595196087	Bacillus subtilis 168 (Hay bacillus) no comment 15966339621984

Before setting up an individual treemap template these issues need to be considered.
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Bacillus cereus no comment 15966366208118	bacteria (adapted by F 05082020) no comment 15966359394561	ASELONGATUS2 Modified 15959298000734	AS07242020 ADDED MORE GENE IN TREE MAP 15956162975201	ASELONGATUS TEST ASELONGATUS 15946783504085
FMT_human_donors_GO_capotal_letters no comment 15927754624478	FMT_human_donors_GO no comment 15927729988058	KO_treemap_keggModules_sdahal_101 (adapted by S 31052020) no comment 15909731352766	KO_treemap105_keggModules_sdahal (adapted by S 18052020) treemap with all my KO IDs mapped 15898321213677	KO_treemap104_keggModules_sdahal (adapted by S 18052020) treemap with all my KO IDs mapped. 15898313204922

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ASELONGATUS2 U7280720T 15959322587304	ASELONGATUS2 I72280720 15959312587526	ASELONGATUS2 U7228072020 15959311478725	ASELONGATUS2 I7228072020 15959303435237	AS07242020 I7TAS 15956171423633
GOslim (adapted by O 24092018) no comment 15954131687709	ASELONGATUS TEST I7TOTAL 15950047704702	ASELONGATUS TEST U7TOTAL 15950046414751	Saccharomyces cerevisiae S288C no comment 15949359987233	Saccharomyces cerevisiae S288C no comment 15949355077510

This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.

The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON GmbH.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.

The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:

Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.

Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.

Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.

Bionic Visualizations