bionic-vis

Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net

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Escherichia coli no comment 15623391896805	Escherichia coli no comment 15623389647479	Escherichia coli no comment 15623383692497	Saccharomyces cerevisiae (Baker's yeast) no comment 15623091925131	Saccharomyces cerevisiae (Baker's yeast) NZM_del 15602508498172
Saccharomyces cerevisiae (Baker's yeast) NZM_del 15602508498171	Saccharomyces cerevisiae (Baker's yeast) NZM_wt 15602508314699	Homo sapiens (Human) no comment 15590995596248	Homo sapiens (Human) no comment 15590990548726	Saccharomyces cerevisiae (Baker's yeast) 0.28 15587389619185

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Mus musculus (Mouse) no comment 15632238016903	Mus musculus (Mouse) no comment 15632235896952	Mus musculus (Mouse) no comment 15632235607513	Mus musculus (Mouse) no comment 15632232729705	Mus musculus (Mouse) no comment 15632228828903
Mus musculus (Mouse) ALL FILO 15632224408985	Mus musculus (Mouse) EXCLUSIVE IN 2 TN 15632220443745	Mus musculus (Mouse) no comment 15632216572665	Mus musculus (Mouse) ALL TN 15632215436117	Mus musculus (Mouse) ALL CAD 15632199879511

Before setting up an individual treemap template these issues need to be considered.
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Pseudomonas aeruginosa PAO1 (adapted by S 18072019) no comment 15633561579087	Pseudomonas aeruginosa PAO1 (adapted by S 17072019) no comment 15633546320818	Pseudomonas aeruginosa PAO1 (adapted by S 16072019) no comment 15632510947775	Pseudomonas aeruginosa PAO1 (adapted by S 11072019) no comment 15627372069308	Pichia pastoris CBS7435 HSA(TRA 190627 II) no comment 15616682578920
Pichia pastoris CBS7435 HSA (TRA 190627) no comment 15616682104236	Pichia pastoris CBS7435 (ppaper by TRA with HSA) no comment 15615705749309	Baureus COL extended test 6 V6 COL extended with N315 KEGG duplicated rpoF renamed to sigB hit and copA removed c-di-AMP molecules added (fixed colors) Fixed dlts 15605298568866	DE_meta_itsRNAs_taxonomy (adapted by D 13062019) no comment 15604392778459	2016vs2017_itsRNA_voronoi_opt3-try2 (adapted by D 30052019) no comment 15592432436043

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or data? Insert an example? Please consider!
cushioning?

Pseudomonas aeruginosa PAO1 (adapted by S 18072019) no comment 15633656120396	Pseudomonas aeruginosa PAO1 (adapted by S 18072019) no comment 15633566520841	Pseudomonas aeruginosa PAO1 (adapted by S 16072019) Acetate 15632516764957	Pseudomonas aeruginosa PAO1 (adapted by S 16072019) Acetate 15632513710351	Pseudomonas aeruginosa PAO1 (adapted by S 11072019) no comment 15628041789718
11 no comment 15626668110778	11 no comment 15626666739793	11 no comment 15626661150400	11 no comment 15626660417461	Pichia pastoris CBS7435 HSA (TRA 190627) tra_t_24_right 15617362710604

This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.

The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON GmbH.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.

The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:

Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.

Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.

Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.