Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
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or data?
Insert an example?
Please consider!
cushioning?
no comment
Mus musculus (Mouse)
no comment
17915756468877
no comment
Mus musculus (Mouse)
no comment
17915756468876
SD
Homo sapiens (Human)
SD
17914968594189
SD
Homo sapiens (Human)
SD
17914926011203
SD
Homo sapiens (Human)
SD
17914907942769
SD
Homo sapiens (Human)
SD
17914899436061
no comment
Homo sapiens (Human)
no comment
17914886162571
no comment
Homo sapiens (Human)
no comment
17903572437146
GBS
Homo sapiens (Human)
GBS
17893852016091
no comment
Homo sapiens (Human)
no comment
17893846823738
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
SD
Homo sapiens (Human)
SD
17914969052850
SD
Homo sapiens (Human)
SD
17914968107717
SD
Homo sapiens (Human)
SD
17914921740944
SD
Homo sapiens (Human)
SD
17914908555581
no comment
Homo sapiens (Human)
no comment
17914852994719
no comment
Homo sapiens (Human)
no comment
17914852706343
no comment
Escherichia coli K-12 MG1655
no comment
17914575681448
no comment
Escherichia coli K-12 MG1655
no comment
17914575485451
no comment
Escherichia coli K-12 MG1655
no comment
17914574630050
no comment
Homo sapiens (Human)
no comment
17914143178719
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
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edit tmd data?
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source?
db link?
comment?
user name?
user template previews
no comment
Ged_SPArthrop
no comment
17914983331676
Imagine a system that gets smarter every single day it runs. That's Vantovo. Every visitor outcome feeds back into the model, sharpening your targeting as it learns what converts for your specific business. Try it free for a week, no contract required.<br /><br />https://shorturl.at/FbTPx
Polly Oles
Imagine a system that gets smarter every single day it runs. That's Vantovo. Every visitor outcome feeds back into the model, sharpening your targeting as it learns what converts for your specific business. Try it free for a week, no contract required.

https://shorturl.at/FbTPx
17912518826913
no comment
Ged_SPHouses
no comment
17912257991343
no comment
Valbum (adapted by L 02102026)
no comment
17909467547464
no comment
Brmbacterium brmbiense
no comment
17889449063501
no comment
Serratia marcescens
no comment
17888599812017
LaSeedMitoProject + Ditz; Colors Lvl1
LA Hufnagel SeedMito At ColorsLvl1
LaSeedMitoProject + Ditz; Colors Lvl1
17865220638420
no comment
1071_simple
no comment
17860223426444
no comment
e1071 (adapted by J 06082026)
no comment
17860215493518
no color code
LA Hufnagel CA_5_NoColor
no color code
17859126795388
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
Ged_Arthropods
Ged_SPArthrop
Ged_Arthropods
17914997164497
no comment
Ecoli_MG1655_KEGG_complete_corrected_color
no comment
17914578457678
no comment
Ecoli_MG1655_KEGG_complete_corrected_color
no comment
17914578298058
no comment
Ecoli_MG1655_KEGG_complete_corrected_color
no comment
17914575837746
Ged_Houses_values_AB
Ged_SPHouses
Ged_Houses_values_AB
17913145742658
Ged_Houses_values_DE
Ged_SPHouses
Ged_Houses_values_DE
17913144713830
Ged_Houses_values_C
Ged_SPHouses
Ged_Houses_values_C
17913132320052
Ged_Houses_values
Ged_SPHouses
Ged_Houses_values
17913128263537
no comment
Ged_SPHouses
no comment
17913126238103
O_VA_LS
Valbum (adapted by L 02102026)
O_VA_LS
17912073194198
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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