Bionic Visualizations
Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
NZM_del
Saccharomyces cerevisiae (Baker's yeast)
NZM_del
15602508498172
NZM_del
Saccharomyces cerevisiae (Baker's yeast)
NZM_del
15602508498171
NZM_wt
Saccharomyces cerevisiae (Baker's yeast)
NZM_wt
15602508314699
no comment
Homo sapiens (Human)
no comment
15590995596248
no comment
Homo sapiens (Human)
no comment
15590990548726
0.28
Saccharomyces cerevisiae (Baker's yeast)
0.28
15587389619185
no comment
Homo sapiens (Human)
no comment
15571413197772
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15568850386199
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15568764309390
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15568758129897
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
exp*cds
Mus musculus (Mouse)
exp*cds
15608654323465
no comment
Mus musculus (Mouse)
no comment
15608652298537
no comment
Escherichia coli K-12 MG1655
no comment
15608630789852
intestine Spatial Sorting mRNA - V7
Mus musculus (Mouse)
intestine Spatial Sorting mRNA - V7
15608616302611
intestine Spatial Sorting mRNA - V6
Mus musculus (Mouse)
intestine Spatial Sorting mRNA - V6
15608595444190
no comment
Mus musculus (Mouse)
no comment
15608595444189
intestine Spatial Sorting mRNA - V4
Mus musculus (Mouse)
intestine Spatial Sorting mRNA - V4
15608594551475
intestine Spatial Sorting mRNA - V3
Mus musculus (Mouse)
intestine Spatial Sorting mRNA - V3
15608592296421
intestine Spatial Sorting mRNA - V2
Mus musculus (Mouse)
intestine Spatial Sorting mRNA - V2
15608586594802
intestine Spatial Sorting mRNA - v1
Mus musculus (Mouse)
intestine Spatial Sorting mRNA - v1
15608578963696
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
browse
edit tmd data?
Insert an example?
source?
db link?
comment?
user name?
user template previews
Kartons. Maxibriefkartons, Umzugskartons… Alle Sorten.<br />Klebebänder. Acryl. Solvent. Alle Sorten.<br /><br />Hochwertige Waren vom Produzent. Fabrikverkauf.<br />Versand am gleichen Tag aus Frankfurt. Bis 95 % günstiger als auf dem Markt.<br /><br />Müllsäcke und Vieles mehr.<br /><br />Info auf: folmax.pw<br /><br />Mit freundlichen Grüßen
Stamm
Kartons. Maxibriefkartons, Umzugskartons… Alle Sorten.
Klebebänder. Acryl. Solvent. Alle Sorten.

Hochwertige Waren vom Produzent. Fabrikverkauf.
Versand am gleichen Tag aus Frankfurt. Bis 95 % günstiger als auf dem Markt.

Müllsäcke und Vieles mehr.

Info auf: folmax.pw

Mit freundlichen Grüßen
15608412278662
V6<br />COL extended with N315<br />KEGG duplicated<br />rpoF renamed to sigB<br />hit and copA removed<br />c-di-AMP molecules added (fixed colors) <br />Fixed dlts
Baureus COL extended test 6
V6
COL extended with N315
KEGG duplicated
rpoF renamed to sigB
hit and copA removed
c-di-AMP molecules added (fixed colors)
Fixed dlts
15605298568866
no comment
DE_meta_itsRNAs_taxonomy (adapted by D 13062019)
no comment
15604392778459
no comment
2016vs2017_itsRNA_voronoi_opt3-try2 (adapted by D 30052019)
no comment
15592432436043
no comment
2016vs2017_asRNA_voronoi_opt3 (adapted by D 30052019) (adapted by D 30052019)
no comment
15592430879811
no comment
2016vs2017_all_sRNA_voronoi_opt3 (adapted by D 30052019) (adapted by D 30052019)
no comment
15592426592285
no comment
2016vs2017_itsRNA_voronoi_opt3 (adapted by D 30052019)
no comment
15592424144562
no comment
2016vs2017_itsRNA_voronoi_opt2 (adapted by D 30052019)
no comment
15592423489878
no comment
2016vs2017_all_sRNA_voronoi (adapted by D 30052019)
no comment
15592383079538
no comment
2016vs2017_asRNA_voronoi (adapted by D 30052019)
no comment
15592382791605
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
NZM_G20190617
SC-hm-1
NZM_G20190617
15607811281149
NZM_20190617_F
SC-hm-1
NZM_20190617_F
15607809702327
no comment
world kingdom biomass
no comment
15606820981491
NZM_del
SC-hm-1
NZM_del
15605844082900
NZM_del
SC-hm-1
NZM_del
15605844082899
NZM_wt
SC-hm-1
NZM_wt
15605838847697
CFS-S-1.0-17-D
Baureus COL extended test 6
CFS-S-1.0-17-D
15605328753676
CFS-K-0.5-17-D
Baureus COL extended test 6
CFS-K-0.5-17-D
15605328537493
CFS-N-0.5-17-D-scaled
Baureus COL extended test 6
CFS-N-0.5-17-D-scaled
15605321132126
CFS-S-1.0-17-E
Baureus COL extended test 6
CFS-S-1.0-17-E
15605320905272
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON GmbH.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
Privacy Policy