Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
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cushioning?
E gltS
Escherichia coli
E gltS
17705289767478
WT E
Escherichia coli
WT E
17705289483616
no comment
Homo sapiens (Human)
no comment
17702169860246
A-P liver down 10%
Mus musculus (Mouse)
A-P liver down 10%
17701223302985
A-P liver up 10%
Mus musculus (Mouse)
A-P liver up 10%
17701223026255
no comment
Homo sapiens (Human)
no comment
17683350945296
no comment
Arabidopsis thaliana (Mousear cress)
no comment
17676392922616
no comment
Arabidopsis thaliana (Mousear cress)
no comment
17676392534336
no comment
Arabidopsis thaliana (Mousear cress)
no comment
17676389342143
no comment
Arabidopsis thaliana (Mousear cress)
no comment
17676300172395
organism?
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no comment
Homo sapiens (Human)
no comment
17710894175491
BRAIN WT UV_WT MOCK
Mus musculus (Mouse)
BRAIN WT UV_WT MOCK
17708087335747
SERUM WT UV_WT MOCK CUTOFF2
Mus musculus (Mouse)
SERUM WT UV_WT MOCK CUTOFF2
17708083711172
PITUITARY WT UV_WT MOCK CUTOFF2
Mus musculus (Mouse)
PITUITARY WT UV_WT MOCK CUTOFF2
17708080741140
SKIN WT UV_WT MOCK CUTOFF2
Mus musculus (Mouse)
SKIN WT UV_WT MOCK CUTOFF2
17708080104306
shared HeLa/Platelet surface
Homo sapiens (Human)
shared HeLa/Platelet surface
17707610378724
no comment
Bacillus subtilis 168 (Hay bacillus)
no comment
17707487569785
no comment
Homo sapiens (Human)
no comment
17707461219596
Chimp2
Homo sapiens (Human)
Chimp2
17707447794700
platelet surface
Homo sapiens (Human)
platelet surface
17707432205594
Before setting up an individual treemap template these issues need to be considered.
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Oj James
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17708822436431
no comment
Eubacterium limosum
no comment
17694827072328
no comment
Eubacterium Limosum
no comment
17694822520491
just simple test with DK
SB_KMAR_v1_01-14-2026
just simple test with DK
17684218848679
no comment
DK_VANPO_template_v3 (adapted by D 14012026)
no comment
17684130916293
no comment
enteroccocus faecalis (adapted by U 22122025)
no comment
17664314612752
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
Bae, real last downregulated 34
Pseudomonas putida KT2440 KO (adapted by N 12072024)
Bae, real last downregulated 34
17701271715244
Bae, real last upregulated 50
Pseudomonas putida KT2440 KO (adapted by N 12072024)
Bae, real last upregulated 50
17701255975358
BAE KT2440 downregulation last
Pseudomonas putida KT2440 KO (adapted by N 12072024)
BAE KT2440 downregulation last
17701255484668
BAE KT2440 upregulation list _except none
Pseudomonas putida KT2440 KO (adapted by N 12072024)
BAE KT2440 upregulation list _except none
17701232562404
Bae kt2440
Pseudomonas putida KT2440 KO (adapted by N 12072024)
Bae kt2440
17701175323878
FUR FeCl
faecalis_KO
FUR FeCl
17700508691191
FUR DPD
faecalis_KO
FUR DPD
17700508348952
no comment
kegg_cl
no comment
17696041101218
no comment
Eubacterium limosum
no comment
17694843697761
Final
Eubacterium limosum
Final
17694837764268
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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