Bionic Visualizations
Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
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or data?
Insert an example?
Please consider!
cushioning?
no comment
Homo sapiens (Human)
no comment
15657672404575
Decreased in R51Q
Mus musculus (Mouse)
Decreased in R51Q
15644114439716
Decreased in R51Q
Mus musculus (Mouse)
Decreased in R51Q
15644114439715
Increased in R51Q
Mus musculus (Mouse)
Increased in R51Q
15644106431058
no comment
Mus musculus (Mouse)
no comment
15637227340153
no comment
Escherichia coli
no comment
15623391896805
no comment
Escherichia coli
no comment
15623389647479
no comment
Escherichia coli
no comment
15623383692497
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15623091925131
NZM_del
Saccharomyces cerevisiae (Baker's yeast)
NZM_del
15602508498172
organism?
comment?
tsv file?
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or data?
Insert an example?
Please consider!
cushioning?
no comment
Mus musculus (Mouse)
no comment
15658873343382
no comment
Mus musculus (Mouse)
no comment
15658846152526
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15658089118485
no comment
Mus musculus (Mouse)
no comment
15657823374824
no comment
Mus musculus (Mouse)
no comment
15657822481213
no comment
Mus musculus (Mouse)
no comment
15657821495143
no comment
Mus musculus (Mouse)
no comment
15657820472618
no comment
Mus musculus (Mouse)
no comment
15657819211339
no comment
Mus musculus (Mouse)
no comment
15657818027023
no comment
Mus musculus (Mouse)
no comment
15657816322205
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
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edit tmd data?
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source?
db link?
comment?
user name?
user template previews
no comment
Human Cells - Numbers and Turnover 2(adapted by RS 14082019)
no comment
15657734252007
no comment
Human Cells - Numbers and Turnover (adapted by RS 14082019)
no comment
15657720875524
updated tree
human cells (adapted by RS 14082019)
updated tree
15657679636092
update: with stomach epithelia
Human Cells rates (adapted by RS 14082019)
update: with stomach epithelia
15657670048737
no comment
Mesoplasma florum L1 (adapted by JCL 12082019)
no comment
15656139621579
includin monocytes, colon epithelial cells and cardiomyocyte
human cells rates (RS 20190811)
includin monocytes, colon epithelial cells and cardiomyocyte
15655107737198
no comment
Mesoplasma florum L1
no comment
15653700570320
no comment
clostridium ljungdahlii v13
no comment
15652137342045
no comment
clostridium ljungdahlii v12
no comment
15652135481358
no comment
clostridium ljungdahlii v9
no comment
15652121210281
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
mass turnover take 2
Human Cells - Numbers and Turnover 2(adapted by RS 14082019)
mass turnover take 2
15657765756522
mass turnover
Human Cells - Numbers and Turnover 2(adapted by RS 14082019)
mass turnover
15657765506473
cellular turnover
Human Cells - Numbers and Turnover 2(adapted by RS 14082019)
cellular turnover
15657765145834
mass turnover
Human Cells - Numbers and Turnover (adapted by RS 14082019)
mass turnover
15657734044802
no comment
Human Cells - Numbers and Turnover (adapted by RS 14082019)
no comment
15657733730901
no comment
Human Cells rates (adapted by RS 14082019)
no comment
15657679450973
no comment
Human Cells rates (adapted by RS 14082019)
no comment
15657679177392
NSAF_v1
Mesoplasma florum L1 (adapted by JCL 12082019)
NSAF_v1
15657045139764
no comment
Mesoplasma florum L1 (adapted by JCL 12082019)
no comment
15656145056771
no comment
Mesoplasma florum L1 (adapted by JCL 12082019)
no comment
15656143419196
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON GmbH.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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