Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
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tsv file?
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or data?
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cushioning?
Ec cipro
Escherichia coli
Ec cipro
16307296214336
nor Ec
Escherichia coli
nor Ec
16307294553047
Ec normal
Escherichia coli
Ec normal
16307293374613
Vn Gly
Escherichia coli
Vn Gly
16298020785504
Vn Glu
Escherichia coli
Vn Glu
16298020451238
Ec Gly
Escherichia coli
Ec Gly
16298020160079
no comment
Escherichia coli
no comment
16298018651303
high
Escherichia coli
high
16295193911291
normal
Escherichia coli
normal
16295190043515
no comment
Escherichia coli
no comment
16295187145774
organism?
comment?
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proteomics from cells
Mus musculus (Mouse)
proteomics from cells
16324325591241
no comment
Homo sapiens (Human)
no comment
16324320003054
no comment
Aliivibrio fischeri ES114
no comment
16324147160651
no comment
Homo sapiens (Human)
no comment
16324020539219
no comment
Homo sapiens (Human)
no comment
16324017729940
nt
Homo sapiens (Human)
nt
16323244849309
he+nhe-
Homo sapiens (Human)
he+nhe-
16323243285379
he+
Homo sapiens (Human)
he+
16323242946359
he-nhe+
Homo sapiens (Human)
he-nhe+
16323241683419
he-
Homo sapiens (Human)
he-
16323241178876
Before setting up an individual treemap template these issues need to be considered.
treemap name?
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source?
db link?
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user name?
user template previews
no comment
NF test 2
no comment
16324345496473
no comment
random 1234124723498
no comment
16324338977446
no comment
test data (adapted by N 23092021)
no comment
16324335934501
no comment
test codon usage
no comment
16324323801561
no comment
test file (adapted by JFUE 23092021)
no comment
16324318195132
no comment
Human A 5.9.21 for OV3
no comment
16308416626396
no comment
Human A (adapted by D 02092021)
no comment
16305766927476
no comment
Human A 23.8.21
no comment
16297171135422
no comment
Human A
no comment
16297161608737
no comment
REE_tree_colors
no comment
16282148898031
organism?
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cushioning?
no comment
NF test 2
no comment
16324347522169
no comment
Caulobacter crescentus NA1000 (KEGG and non-KEGG (Not Mapped)) (adapted by J 09112018)
no comment
16318912046250
whole cell 3 oo 3
Corynebacterium pseudotuberculosis 12CS0282 (adapted by J 07062021)
whole cell 3 oo 3
16317964242098
secreted 3 oo 3 JM 16092021
Corynebacterium pseudotuberculosis 12CS0282 (adapted by J 07062021)
secreted 3 oo 3 JM 16092021
16317961294034
shaving 3 ou 3 JM 16092021
Corynebacterium pseudotuberculosis 12CS0282 (adapted by J 07062021)
shaving 3 ou 3 JM 16092021
16317956403328
ov3-met kd-C11 9.9
Human A 5.9.21 for OV3
ov3-met kd-C11 9.9
16311766471768
ov3-met sc-H8 9.9
Human A 5.9.21 for OV3
ov3-met sc-H8 9.9
16311755400847
OV3 KD-C11 9.9
Human A (adapted by D 02092021)
OV3 KD-C11 9.9
16311754052612
OV3 SC-H8 9.9
Human A 5.9.21 for OV3
OV3 SC-H8 9.9
16311753387829
OV3 KD-C11
Human A 5.9.21 for OV3
OV3 KD-C11
16308420540364
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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