bionic-vis

Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net

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Homo sapiens (Human) no comment 15815320176908	Homo sapiens (Human) no comment 15815292822521	Escherichia coli sa 15813707175928	Homo sapiens (Human) no comment 15813030391029	Homo sapiens (Human) no comment 15809303139783
Homo sapiens (Human) V005 15804614430181	Homo sapiens (Human) V004_02 15804608583984	Homo sapiens (Human) no comment 15785618093975	Homo sapiens (Human) no comment 15785609348054	Homo sapiens (Human) no comment 15785609348053

organism?	select
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tsv file?	browse
or data? Insert an example? Please consider!
cushioning?

Homo sapiens (Human) no comment 15817505652788	Homo sapiens (Human) no comment 15817504347872	Homo sapiens (Human) no comment 15817502974327	Homo sapiens (Human) MK 5 15816895856394	Homo sapiens (Human) Tears 15816891391473
Saccharomyces cerevisiae (Baker's yeast) no comment 15816835273668	Saccharomyces cerevisiae (Baker's yeast) no comment 15816835012605	Saccharomyces cerevisiae (Baker's yeast) no comment 15816834994929	Synechococcus elongatus sp. PCC7942 I2021320 15816326129503	Synechococcus elongatus sp. PCC7942 2I021320 15816322855309

Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?	browse
edit tmd data? Insert an example?	text tree
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comment?
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user template previews

plastidfuncat2 (adapted by H 12022020) no comment 15815167445972	plastid funcats (adapted by H 12022020) no comment 15815163619486	Ath (130120) no comment 15789235132201	Arabidopsis thaliana colors12 (adapted by B 10012020) no comment 15786391663220	Arabidopsis thaliana colors11 (adapted by B 09012020) no comment 15785849895078
protein (09012020) (adapted by BH 09012020) no comment 15785829508271	leeo8 no comment 15767269198380	mitochondria biomass no comment 15762877617433	Arabidopsis_Location no comment 15760693734122	gypsum_metagenome (adapted by G 09122019) no comment 15759099664487

organism?	select
comment?
tsv file?	browse
or data? Insert an example? Please consider!
cushioning?

plastidfuncat2 (adapted by H 12022020) no comment 15815168385904	plastid funcats (adapted by H 12022020) no comment 15815164936305	Mammals unique (adapted by EK 06112019) (adapted by EK 06112019) (adapted by EK 09122019) no comment 15795135293496	Mammals unique (adapted by EK 06112019) (adapted by EK 06112019) (adapted by EK 09122019) no comment 15795128209580	Mammals unique (adapted by EK 06112019) (adapted by EK 06112019) (adapted by EK 09122019) no comment 15795128043053
Mammals unique (adapted by EK 06112019) (adapted by EK 06112019) (adapted by EK 09122019) no comment 15795106372582	Mammals unique (adapted by EK 06112019) (adapted by EK 06112019) (adapted by EK 09122019) no comment 15794521226631	Mammals unique (adapted by EK 06112019) (adapted by EK 06112019) (adapted by EK 09122019) no comment 15794468430994	Mammals unique (adapted by EK 06112019) (adapted by EK 06112019) (adapted by EK 09122019) no comment 15794468430993	Ath (130120) no comment 15792740432117

This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.

The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON GmbH.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.

The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:

Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.

Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.

Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.

Bionic Visualizations