Bionic Visualizations
Proteomaps
To support the generation of user defined treemap layouts we provide the following workflow:
  1. Choose an organism (from the list of models) or provide a species name. This will later help you find your treemap template in the list of user defined layouts.
  2. Comments are useful to explain how and why a treemap layout has been constructed. Especially changes of already available treemaps should be explained. This may help for a general improvement of gene/protein functional assignments.
  3. The user name helps us to build the template name in the list of treemap layouts.
  4. Email is optional, if we realize that you have difficulties in constructing treemaps, this helps us to contact you for further explanations.
    Neither the user name nor the email will be made publicly available.
  5. We support two ways how you can submit the treemap data: The tmd (treemap definition) file was defined to support a scripted or manual generation by using your own computer (use a text editor such as notepad++, notepad, emeditor or others). You can save this file (Use Save within your text editor) and upload it by clicking the [browse] button just on this web page. Choose the file by the file chooser and upload it.
  6. Alternatively you can copy and past the text and insert it into the data form field on this page. To see how the tmd file is structured please click the [insert an example]-link just on this page. The form field now shows the organism specific tmd file that is used in our standard ProteoMap application as a template. The file contains a variety of columns (it is a tab separated text file). For further explanations please read the text linked under [Please consider].
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
browse
edit tmd data?
Insert an example?
source?
comment?
user name?
user template previews
allow multiple identical leafs; link to NCBI
Salmonella enterica subsp. enterica serovar Typhimurium LT2 the SEED v2 (adapted by SWCD 05072018)
allow multiple identical leafs; link to NCBI
15307754890694
no comment
Salmonella enterica subsp. enterica serovar Typhimurium LT2 the SEED (adapted by SWCD 05072018)
no comment
15307744701420
no comment
Human Cells - rates (adapted by RS 10062018)
no comment
15286485978637
no comment
Danio rerio 2 (Zebrafish) (adapted by M 23052018)
no comment
15271156882517
no comment
Danio rerio (Zebrafish) (adapted by M 22052018)
no comment
15270209734290
no comment
E.coli_DH10B_w_circuit
no comment
15257594987923
no comment
TIGRFAM with IDs (adapted by DB 25032018)
no comment
15219832357560
no comment
KOG database ID (adapted by DB 22032018)
no comment
15217256839236
no comment
taxonomy MP (adapted by DB 20032018) (adapted by DB 21032018)
no comment
15216284191800
no comment
taxonomy MP (adapted by DB 20032018)
no comment
15215843943681