bionic-vis

Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net

version 1.0
2.0
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user maps

Escherichia coli

eco_Li_complete

17153391916401

Escherichia coli

eco_Li_complete

17153390463260

Escherichia coli

eco_Li_metDropout

17153383456880

Homo sapiens (Human)

no comment

17150087101121

Arabidopsis thaliana (Mousear cress)

vt2

17126659101650

Homo sapiens (Human)

no comment

17118103770934

Homo sapiens (Human)

134112

17116827956537

Homo sapiens (Human)

no comment

17116827838978

Homo sapiens (Human)

Pathways - B vs D ( Unregulated Proteins)

17115158383227

Homo sapiens (Human)

no comment

17115157204044

organism?	select
comment?
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or data? Insert an example? Please consider!
cushioning?

Mus musculus (Mouse)

wt3

17161196531544

Mus musculus (Mouse)

wt2

17160867096345

Mus musculus (Mouse)

3.3

17160856502232

Mus musculus (Mouse)

17160852070546

Mus musculus (Mouse)

wt2.0

17160833528406

Mus musculus (Mouse)

wt3

17160828425944

Mus musculus (Mouse)

wt2

17160826167093

Mus musculus (Mouse)

wt1

17160825177014

Aliivibrio fischeri ES114

no comment

17160312796086

Saccharomyces cerevisiae (Baker's yeast)

no comment

17160312660501

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17160937489758

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17159381728810

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17158882965466

L.A_BH10.2

no comment

17138629590243

Mesoplasma_florum_V4_tree_UP_MAN_RED_FIXED

no comment

17113950706400

Mesoplasma_florum_V4_tree_UP_GLU_RED_FIXED

no comment

17113950394739

Mesoplasma_florum_V4_tree_UP_C6S_RED_FIXED

no comment

17113950170603

Mesoplasma_florum_V4_tree_UP_A6S_RED_FIXED

no comment

17113949006014

organism?	select
comment?
tsv file?	browse
or data? Insert an example? Please consider!
cushioning?

FN_KEGG_022822_V2

no comment

17160388156564

FN_KEGG_022122_V3

no comment

17160381607427

kegg_mtq

no comment

17159994870573

kegg_cl

no comment

17159986251127

FN_KEGG_022122_V2

no comment

17159434847957

kegg_mtq

no comment

17159433504089

kegg_km

no comment

17159433272859

kegg_cl

no comment

17159430836647

kegg_cl

no comment

17156954012260

kegg_cl

no comment

17156953327439

This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.

The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.

The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:

Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.

Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.

Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.

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