Bionic Visualizations
Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
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or data?
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Please consider!
cushioning?
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15289763100053
no comment
Mus musculus (Mouse)
no comment
15271710568982
HU240418
Homo sapiens (Human)
HU240418
15271302533226
test3
Saccharomyces cerevisiae (Baker's yeast)
test3
15271300768375
request1
Saccharomyces cerevisiae (Baker's yeast)
request1
15271294357126
test2
Saccharomyces cerevisiae (Baker's yeast)
test2
15271294069780
test240518
Saccharomyces cerevisiae (Baker's yeast)
test240518
15271290110212
XIK!!!
Escherichia coli
XIK!!!
15262023724031
XIK_Whole_proteome
Escherichia coli
XIK_Whole_proteome
15261224492988
no comment
Synechocystis species 6803 (Cyanobacterium)
no comment
15245820819870
organism?
comment?
tsv file?
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or data?
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Please consider!
cushioning?
no comment
Pseudomonas aeruginosa PAO1
no comment
15296158753606
no comment
Sus scrofa (Pig)
no comment
15295030567257
no comment
Sus scrofa (Pig)
no comment
15295028676286
no comment
Sus scrofa (Pig)
no comment
15295022912098
no comment
Sus scrofa (Pig)
no comment
15294970002134
no comment
Homo sapiens (Human)
no comment
15294581187584
no comment
Homo sapiens (Human)
no comment
15294048452152
no comment
Homo sapiens (Human)
no comment
15292414784480
no comment
Homo sapiens (Human)
no comment
15292312835636
no comment
Homo sapiens (Human)
no comment
15290714322003
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
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edit tmd data?
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source?
db link?
comment?
user name?
user template previews
no comment
Human Cells - rates (adapted by RS 10062018)
no comment
15286485978637
no comment
Danio rerio 2 (Zebrafish) (adapted by M 23052018)
no comment
15271156882517
no comment
Danio rerio (Zebrafish) (adapted by M 22052018)
no comment
15270209734290
no comment
E.coli_DH10B_w_circuit
no comment
15257594987923
no comment
TIGRFAM with IDs (adapted by DB 25032018)
no comment
15219832357560
no comment
KOG database ID (adapted by DB 22032018)
no comment
15217256839236
no comment
taxonomy MP (adapted by DB 20032018) (adapted by DB 21032018)
no comment
15216284191800
no comment
taxonomy MP (adapted by DB 20032018)
no comment
15215843943681
no comment
Taxa biofilm L (adapted by DB 14032018)
no comment
15210499670233
no comment
Test taxa MP (adapted by DB 13032018)
no comment
15209467258892
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
mass turnover
Human Cells - rates (adapted by RS 10062018)
mass turnover
15286549276992
numbers
Human Cells - rates (adapted by RS 10062018)
numbers
15286549039167
no comment
Human Cells - rates (adapted by RS 10062018)
no comment
15286548722439
no comment
world kingdom biomass
no comment
15277857275993
no comment
world kingdom biomass
no comment
15277850533760
no comment
World biomass (adapted by Y 17072016) (adapted by Y 17072016)
no comment
15277848431828
no comment
Danio rerio 2 (Zebrafish) (adapted by M 23052018)
no comment
15271164419268
no comment
Danio rerio 2 (Zebrafish) (adapted by M 23052018)
no comment
15271162424798
no comment
Danio rerio 2 (Zebrafish) (adapted by M 23052018)
no comment
15271158728563
no comment
Danio rerio (Zebrafish) (adapted by M 22052018)
no comment
15271147997428
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON GmbH.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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