Bionic Visualizations
Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
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or data?
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cushioning?
Saccharomyces cerevisiae (Baker's yeast)
no comment
14987647286863
Homo sapiens (Human)
BJ 100 K
14982397236489
Homo sapiens (Human)
no comment
14982396617768
Homo sapiens (Human)
CTRL 100 K
14982394222230
Homo sapiens (Human)
BJ 20 K
14982388730779
Homo sapiens (Human)
CTRL 20 K
14982378339516
Homo sapiens (Human)
CTRL 20 K
14982378339515
Homo sapiens (Human)
no comment
14982331207722
Saccharomyces cerevisiae (Baker's yeast)
Test Yeast trl
14925221268931
Homo sapiens (Human)
H50_OBNS
14921809414969
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
Homo sapiens (Human)
PD SN
15009995550688
Homo sapiens (Human)
CTRL SN
15009995304556
Homo sapiens (Human)
CTRL SN
15009994918966
Homo sapiens (Human)
no comment
15009992189106
Homo sapiens (Human)
no comment
15009987877519
Homo sapiens (Human)
no comment
15009987877518
Homo sapiens (Human)
no comment
15009978976122
Homo sapiens (Human)
no comment
15009970503992
Homo sapiens (Human)
no comment
15009056882744
Homo sapiens (Human)
low
15006828116922
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
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edit tmd data?
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source?
db link?
comment?
user name?
user template previews
HumanCells (adapted by RS 01072017)
no comment
14989099177579
lymphoc (adapted by RS 23052017)
third try
14954880694230
lymphocytes (adapted by RS 23052017)
no comment
14954865864484
HumanCells (adapted by RS 22052017)
including lymphocytes
14954847119974
MAT 5.2
no comment
14949072229792
mAT 5.1
no comment
14949061110377
solo complem 4
corregido
14948069989748
solo complem 3
no comment
14948066197952
Solo compl
no comment
14948062629165
Mat 4.2
sumas
14947959452584
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
HumanCells (adapted by RS 01072017)
no comment
15009278498069
HumanCells (adapted by RS 01072017)
no comment
14989106928746
HumanCells (adapted by RS 22052017)
no comment
14989098837970
lymphoc (adapted by RS 23052017)
numbers (10^10)
14954887436368
lymphocytes (adapted by RS 23052017)
numbers (10^10)
14954886446281
lymphoc (adapted by RS 23052017)
turnover rate
14954886014580
HumanCells (adapted by RS 22052017)
no comment
14954860205858
HumanCells (adapted by RS 22052017)
no comment
14954859719065
Animal biomass with birds (adapted by YBO 13092016)
no comment
14950194549065
Animal biomass with birds (adapted by YBO 13092016)
no comment
14950186457659
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON GmbH.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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