bionic-vis

Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net

version 1.0
2.0
+
user maps

Escherichia coli no comment 15387506305027	Homo sapiens (Human) mj_20180928_1 15381212916133	Saccharomyces cerevisiae (Baker's yeast) Seknzm-3 15372381559904	Saccharomyces cerevisiae (Baker's yeast) Seknzm-2 15372380354828	Saccharomyces cerevisiae (Baker's yeast) Seknzm-1 15372379726301
Homo sapiens (Human) no comment 15348722559924	Homo sapiens (Human) no comment 15348711960584	Saccharomyces cerevisiae (Baker's yeast) no comment 15339489734799	Saccharomyces cerevisiae (Baker's yeast) no comment 15339489622050	Saccharomyces cerevisiae (Baker's yeast) no comment 15339383097090

organism?	select
comment?
tsv file?	browse
or data? Insert an example? Please consider!
cushioning?

Homo sapiens (Human) no comment 15398842557456	Homo sapiens (Human) no comment 15398702819085	Homo sapiens (Human) no comment 15398566976668	Homo sapiens (Human) no comment 15398566313071	Homo sapiens (Human) no comment 15398563815007
Aliivibrio fischeri ES114 no comment 15398521021314	Caenorhabditis elegans (Roundworm) cluster365condA 15397627876912	Homo sapiens (Human) no comment 15397141022320	Homo sapiens (Human) tratado 6h 15397109734099	Homo sapiens (Human) ctrl 6h 15397107343872

Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?	browse
edit tmd data? Insert an example?	text tree
source?
db link?
comment?
user name?
email?

Cut
Copy
Paste
New
Delete
Edit

user template previews

staphylococcus aureus nctc 8325 ci1149 zn02 (adapted by L 18102018) no comment 15398640326220	staphylococcus aureus nctc 8325 cowan (adapted by L 18102018) no comment 15398630724182	staphylococcus aureus nctc 8325 je2 (adapted by L 18102018) no comment 15398619125134	staphylococcus aureus nctc 8325 ci1149_3 (adapted by L 18102018) (adapted by L 18102018) no comment 15398589176539	staphylococcus aureus nctc 8325 ci1149_2 (adapted by L 18102018) no comment 15398585868703
staphylococcus aureus nctc 8325 ci1149 (adapted by L 18102018) ci1149 ph5.5v7.4 15398575470839	staphylococcus aureus NCTC 8325 (adapted by L 18102018) no comment 15398566551718	Danio rerio 4 (Zebrafish) (adapted by MS 10102018) no comment 15391637722168	leeo (adapted by L 08102018) no comment 15389970656506	leeo6.1 no comment 15389837209324

organism?	select
comment?
tsv file?	browse
or data? Insert an example? Please consider!
cushioning?

Danio rerio 4 (Zebrafish) (adapted by MS 10102018) cave 15391655671527	Danio rerio 4 (Zebrafish) (adapted by MS 10102018) surface 15391655496948	Danio rerio 4 (Zebrafish) (adapted by MS 10102018) cave 15391654262741	Danio rerio 4 (Zebrafish) (adapted by MS 10102018) surface 15391654093619	Danio rerio 4 (Zebrafish) (adapted by MS 10102018) no comment 15391651365723
Danio rerio 4 (Zebrafish) (adapted by MS 10102018) no comment 15391641720612	Danio rerio 4 (Zebrafish) (adapted by MS 10102018) no comment 15391638721204	Danio rerio 4 (Zebrafish) (adapted by MS 10102018) no comment 15391638045348	leeo (adapted by L 08102018) no comment 15390016958405	leeo6.1 no comment 15389865352961

This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.

The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON GmbH.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.

The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:

Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.

Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.

Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.