Bionic Visualizations
Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
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or data?
Insert an example?
Please consider!
cushioning?
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15339489734799
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15339489622050
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15339383097090
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15339382967780
no comment
Synechocystis species 6803 (Cyanobacterium)
no comment
15336534192533
-G
Saccharomyces cerevisiae (Baker's yeast)
-G
15321734851672
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15320071633058
JD
Mus musculus (Mouse)
JD
15318413022443
JPS
Mus musculus (Mouse)
JPS
15318412532977
GM
Mus musculus (Mouse)
GM
15318410207081
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
Mus musculus (Mouse)
no comment
15342532534935
no comment
Mus musculus (Mouse)
no comment
15342530527621
no comment
Mus musculus (Mouse)
no comment
15342529779457
no comment
Mus musculus (Mouse)
no comment
15342521795263
no comment
Mus musculus (Mouse)
no comment
15342517479947
no comment
Mus musculus (Mouse)
no comment
15342506457503
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15342320699088
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15342317852161
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15342307344456
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15342306884675
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
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edit tmd data?
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source?
db link?
comment?
user name?
user template previews
no comment
SC-hm-1
no comment
15340080899119
no comment
E.coli_DH10B_w_circuit (adapted by J 31072018)
no comment
15330648929782
allow multiple identical leafs; link to NCBI
Salmonella enterica subsp. enterica serovar Typhimurium LT2 the SEED v2 (adapted by SWCD 05072018)
allow multiple identical leafs; link to NCBI
15307754890694
no comment
Salmonella enterica subsp. enterica serovar Typhimurium LT2 the SEED (adapted by SWCD 05072018)
no comment
15307744701420
no comment
Human Cells - rates (adapted by RS 10062018)
no comment
15286485978637
no comment
Danio rerio 2 (Zebrafish) (adapted by M 23052018)
no comment
15271156882517
no comment
Danio rerio (Zebrafish) (adapted by M 22052018)
no comment
15270209734290
no comment
E.coli_DH10B_w_circuit
no comment
15257594987923
no comment
TIGRFAM with IDs (adapted by DB 25032018)
no comment
15219832357560
no comment
KOG database ID (adapted by DB 22032018)
no comment
15217256839236
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
SC-hm-1
no comment
15340084049355
no comment
SC-hm-1
no comment
15340083019254
no comment
World biomass with subdivision (adapted by YBO 13092016)
no comment
15336509798839
no comment
World biomass with subdivision (adapted by YBO 13092016)
no comment
15336508418271
no comment
World biomass with subdivision (adapted by YBO 13092016)
no comment
15336507351242
no comment
World biomass with subdivision (adapted by YBO 13092016)
no comment
15332327107128
no comment
World biomass with subdivision (adapted by YBO 13092016)
no comment
15332324751539
no comment
World biomass with subdivision (adapted by YBO 13092016)
no comment
15332315674174
mass turnover
Human Cells - rates (adapted by RS 10062018)
mass turnover
15331509661606
no comment
Human Cells - rates (adapted by RS 10062018)
no comment
15331509244289
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON GmbH.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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