bionic-vis

Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net

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Escherichia coli no comment 15387506305027	Homo sapiens (Human) mj_20180928_1 15381212916133	Saccharomyces cerevisiae (Baker's yeast) Seknzm-3 15372381559904	Saccharomyces cerevisiae (Baker's yeast) Seknzm-2 15372380354828	Saccharomyces cerevisiae (Baker's yeast) Seknzm-1 15372379726301
Homo sapiens (Human) no comment 15348722559924	Homo sapiens (Human) no comment 15348711960584	Saccharomyces cerevisiae (Baker's yeast) no comment 15339489734799	Saccharomyces cerevisiae (Baker's yeast) no comment 15339489622050	Saccharomyces cerevisiae (Baker's yeast) no comment 15339383097090

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Homo sapiens (Human) M9 15421201521967	Escherichia coli K-12 MG1655 no comment 15420964972059	Drosophila melanogaster (Fruitfly) no comment 15420963587977	Pseudomonas aeruginosa PAO1 no comment 15420418535903	Escherichia coli K-12 MG1655 ++ Galactose 15420407916789
Escherichia coli K-12 MG1655 ++ Fumarate 15420407766329	Escherichia coli K-12 MG1655 ++ Pyruvate 15420407571246	Escherichia coli K-12 MG1655 ++ Xylose 15420407393306	Escherichia coli K-12 MG1655 ++ Acetate 15420407210810	Escherichia coli K-12 MG1655 ++ Mannose 15420407009690

Before setting up an individual treemap template these issues need to be considered.
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Mammal order no comment 15421218470379	mammal orders no comment 15421195187150	Mammals unique no comment 15421169957800	mammals biomass (adapted by EK 13112018) no comment 15421169397184	Mammals trial no comment 15420966001281
Stenotrophomonas (adapted by HM 13112018) no comment 15420637543177	Animal biomass (adapted by YBO 20072016) (adapted by A 12112018) no comment 15420367070569	Human Cells - percentage in humans (adapted by A 12112018) no comment 15420367070568	Caulobacter crescentus NA1000 (KEGG and non-KEGG (Not Mapped)) (adapted by J 09112018) no comment 15417881334237	Caulobacter crescentus NA1000 (V2: No Non-Reported Kegg Category) (adapted by J 09112018) (adapted by J 09112018) no comment 15417847679286

organism?	select
comment?
tsv file?	browse
or data? Insert an example? Please consider!
cushioning?

Stenotrophomonas (adapted by HM 13112018) no comment 15421245734648	Stenotrophomonas (adapted by HM 13112018) no comment 15421235813897	Stenotrophomonas (adapted by HM 13112018) no comment 15421234487858	Stenotrophomonas (adapted by HM 13112018) no comment 15421233950606	Stenotrophomonas (adapted by HM 13112018) no comment 15421220908581
Mammals unique no comment 15421193769840	mammal biomass no comment 15421169724738	Caulobacter crescentus NA1000 (KEGG and non-KEGG (Not Mapped)) (adapted by J 09112018) no comment 15417942443561	Caulobacter crescentus NA1000 (V2: No Non-Reported Kegg Category) (adapted by J 09112018) (adapted by J 09112018) no comment 15417881035130	Caulobacter crescentus NA1000 (No Non-Reported Kegg Category) (adapted by J 09112018) no comment 15417847071172

This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.

The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON GmbH.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.

The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:

Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.

Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.

Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.