Bionic Visualizations
Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
test tp5
Homo sapiens (Human)
test tp5
15237934208177
no comment
Homo sapiens (Human)
no comment
15236132256961
macrophage
Homo sapiens (Human)
macrophage
15194921792315
macrophage
Homo sapiens (Human)
macrophage
15194921792314
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15180174699695
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15180002352770
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15141713060909
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15108718142528
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15108717631179
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15108716955100
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
Rattus norvegicus (Rat)
no comment
15242360046210
no comment
Escherichia coli K-12 MG1655
no comment
15241520874547
no comment
Escherichia coli K-12 MG1655
no comment
15241520345509
no comment
Escherichia coli K-12 MG1655
no comment
15241491218162
2
Arabidopsis thaliana (Mousear cress)
2
15241466194443
1
Arabidopsis thaliana (Mousear cress)
1
15241465481736
2
Arabidopsis thaliana (Mousear cress)
2
15241404184072
1
Arabidopsis thaliana (Mousear cress)
1
15241403988564
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15240460334951
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15240454400922
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
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edit tmd data?
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source?
db link?
comment?
user name?
user template previews
no comment
TIGRFAM with IDs (adapted by DB 25032018)
no comment
15219832357560
no comment
KOG database ID (adapted by DB 22032018)
no comment
15217256839236
no comment
taxonomy MP (adapted by DB 20032018) (adapted by DB 21032018)
no comment
15216284191800
no comment
taxonomy MP (adapted by DB 20032018)
no comment
15215843943681
no comment
Taxa biofilm L (adapted by DB 14032018)
no comment
15210499670233
no comment
Test taxa MP (adapted by DB 13032018)
no comment
15209467258892
no comment
TIGRFAM (adapted by D 12032018) (adapted by D 12032018)
no comment
15208711156007
no comment
TIGRFAM (adapted by D 12032018)
no comment
15208692484636
no comment
TEMPPLATE371017 3
no comment
15163104331825
no comment
abreviat (adapted by G 18012018)
no comment
15163103929656
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
KOG database ID (adapted by DB 22032018)
no comment
15222791506019
no comment
KOG database ID (adapted by DB 22032018)
no comment
15222790130387
no comment
KOG database ID (adapted by DB 22032018)
no comment
15222788394880
no comment
KOG database ID (adapted by DB 22032018)
no comment
15222786528640
no comment
KOG database ID (adapted by DB 22032018)
no comment
15222784941007
no comment
KOG database ID (adapted by DB 22032018)
no comment
15222783179435
no comment
KOG database ID (adapted by DB 22032018)
no comment
15222782015979
no comment
KOG database ID (adapted by DB 22032018)
no comment
15222779985613
no comment
KOG database ID (adapted by DB 22032018)
no comment
15222779393190
no comment
world kingdom biomass
no comment
15222454284883
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON GmbH.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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