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1 1AAIndomalayan Phoridae Descriptions 8.2 -neurospora 8.2 -neurospora2 11 11 (adapted by E 13032025) 11 (adapted by H 13012025) 2016vs2017_all_sRNA_voronoi (adapted by D 30052019) 2016vs2017_all_sRNA_voronoi_opt3 (adapted by D 30052019) (adapted by D 30052019) 2016vs2017_asRNA_voronoi (adapted by D 30052019) 2016vs2017_asRNA_voronoi_opt3 (adapted by D 30052019) (adapted by D 30052019) 2016vs2017_itsRNA_voronoi (adapted by D 30052019) 2016vs2017_itsRNA_voronoi_opt2 (adapted by D 30052019) 2016vs2017_itsRNA_voronoi_opt3 (adapted by D 30052019) 2016vs2017_itsRNA_voronoi_opt3-try2 (adapted by D 30052019) 2023-06-22-berggylt-bioproc-100-vs-0 2023-06-22-berggylt-bioproc-1000-vs-100 2023-06-22-berggylt-component-100-vs-0 2023-06-22-berggylt-component-1000-vs-0 2023-06-22-berggylt-molecular-100-vs-0 2023_SW_vs_FW-50-LD-NF 2023_SW_vs_FW-200-LD-NF 2023_SW_vs_FW-350-LD-NF 2024-10-04-70-bioproc 2024-10-04-70-cellcomp 2024-10-04-70-molfun 2024-10-04-90-bioproc 2024-10-04-90-cellcomp 2024-10-04-90-molfun 2024-10-04-100-bioproc 2024-10-04-100-cellcomp 2024-10-04-100-molfun 2024-10-05-F-70-bioproc 2024-10-05-F-70-cellcomp 2024-10-05-F-70-molfun 2024-10-05-F-90-bioproc 2024-10-05-F-90-cellcomp 2024-10-05-F-90-molfun 2024-10-05-F-100-bioproc 2024-10-05-F-100-cellcomp 2024-10-05-F-100-molfun 2024-10-05-M-70-bioproc 2024-10-05-M-70-cellcomp 2024-10-05-M-70-molfun 2024-10-05-M-90-bioproc 2024-10-05-M-90-cellcomp 2024-10-05-M-90-molfun 2024-10-05-M-100-bioproc 2024-10-05-M-100-cellcomp 2024-10-05-M-100-molfun 2024-10-19-F-70-bioproc 2024-10-19-F-70-cellcomp 2024-10-19-F-70-molfun 2024-10-19-F-90-bioproc 2024-10-19-F-90-cellcomp 2024-10-19-F-90-molfun 2024-10-19-F-100-bioproc 2024-10-19-F-100-cellcomp 2024-10-19-F-100-molfun 2024-10-19-M-70-bioproc 2024-10-19-M-70-cellcomp 2024-10-19-M-70-molfun 2024-10-19-M-90-bioproc 2024-10-19-M-90-cellcomp 2024-10-19-M-90-molfun 2024-10-19-M-100-bioproc 2024-10-19-M-100-cellcomp 2024-10-19-M-100-molfun 2024_F_Exp_After_vs_F_notExp_After-biological_process-4 2024_F_Exp_After_vs_F_notExp_After-cellular_component 2024_F_Exp_After_vs_F_notExp_After-molecular_function 2024_F_Exp_vs_F_notExp-biological_process 2024_F_Exp_vs_F_notExp-cellular_component 2024_F_Exp_vs_F_notExp-molecular_function 2024_M_Exp_After_vs_M_notExp_After-biological_process 2024_M_Exp_After_vs_M_notExp_After-cellular_component 2024_M_Exp_After_vs_M_notExp_After-molecular_function 2024_M_Exp_vs_M_notExp-biological_process 2024_M_Exp_vs_M_notExp-cellular_component 2024_M_Exp_vs_M_notExp-molecular_function 2025-04-homo-sapiens-immune-system 2025-04-homo-sapiens-immune-system-day1-day3 2025-05-homo-sapiens-immune-system-2 2025-05-homo-sapiens-immune-system-2-day1-day3 AA1 aa1 AA2 AA3 (adapted by B 20112019) AA4 AA5 AA6 AA7 AA8 AA9 AA10 AA13 AAAfinal AAfinal AAIndomalayan Phoridae Descriptions abreviat (adapted by G 18012018) Acetivibrio thermocellus test V6 (adapted by CN 25062025) activated sludge (adapted by W 12112015) AD (Meta_COG) (adapted by A 30092020) AD (Meta_COG_Mainroles) (adapted by A 30092020) AD (Meta_COG_Metabolism) (adapted by A 30092020) (adapted by A 30092020) AD (tax meta all) AD tax_rgb AD_COG_Metabolism_1 (adapted by A 09102020) AD_Cog_tax_test4 AD_Tax_RGB_final air (adapted by D 04092019) airborne fungi (adapted by D 05092019) Alecia Triggs Aliivibrio fischeri ES114 Alonzo Manchee Alphonso Dorsett AminoAcids Andrea Creed Animal biomass (adapted by YBO 20072016) Animal biomass2 (adapted by YBO 04082016) Animal biomass with birds (adapted by YBO 13092016) Animal biomass with birds (adapted by YBO 13092016) (adapted by N 18092018) Animal biomass with birds (adapted by YBO 13092016) (adapted by N 18092018) (adapted by N 18092018) Animal biomass with birds, humans unclassified (adapted by YBO 13092016) Apis melifera (Western honey bee) Arabidopis_proteomap_BN Arabidopsis-2024-6 Arabidopsis-2024-6 (adapted by M 19062024) Arabidopsis-selection Arabidopsis-selection-L6b Arabidopsis L6 Arabidopsis L6 (adapted by M 18062024) Arabidopsis thaliana (02122019)colors8 Arabidopsis thaliana (02122019)colors9 Arabidopsis thaliana (02122019)colors10 Arabidopsis thaliana (28112019)colors2 Arabidopsis thaliana (29112019)colors3 Arabidopsis thaliana (29112019)colors4 Arabidopsis thaliana (29112019)colors5 Arabidopsis thaliana (29112019)colors6 Arabidopsis thaliana (29112019)colors7 Arabidopsis thaliana (adapted by X) (adapted by P 14112019) Arabidopsis thaliana (adapted by X 13112019) Arabidopsis thaliana (Mousear cress) (version 1.0) Arabidopsis thaliana (Mousear cress) (version 2.0) Arabidopsis thaliana (Mousear cress) (version 2.0) (adapted by B 11112019) Arabidopsis thaliana (Mousear cress) (version 2.0) (adapted by B 11112019) (adapted by B 16072025) Arabidopsis thaliana (Mousear cress) (version 2.0) (adapted by B 12112019) Arabidopsis thaliana (Mousear cress) (version 2.0) (adapted by B 12112019) (adapted by B 12112019) Arabidopsis thaliana (Mousear cress) (version 2.0) (adapted by B 12112019) (adapted by B 12112019) (adapted by B 12112019) (adapted by BR 12112019) Arabidopsis thaliana (Mousear cress) (version 2.0) (adapted by Z 12112019) Arabidopsis thaliana (new colors26.11.2019) Arabidopsis thaliana (prtn) Arabidopsis thaliana (prtn2) Arabidopsis thaliana (prtn3) Arabidopsis thaliana (prtn4) Arabidopsis thaliana (version 2.0) (adapted by Z 12112019) Arabidopsis thaliana colors11 (adapted by B 09012020) Arabidopsis thaliana colors12 (adapted by B 10012020) Arabidopsis thaliana v9 (adapted by N 09022023) Arabidopsis thaliana v12_S (adapted by N 23032023) Arabidopsis thaliana v13_S Arabidopsis V15 (adapted by N 07082023) Arabidopsis_Hordeum_plus (adapted by M 06042022) (adapted by M 06052022) (adapted by M 16102022) (adapted by M 20092024) Arabidopsis_Location Arabidopsis_Update_Oryza ARC_prot_1 Arthropoda (adapted by A 11042019) Arthropode mass 2 Arthropode mass 3 Arthropode mass 3 15-4 Arthropod new Arthropods 15-4 19:16 (adapted by A 15042019) AS07242020 ASELONGATUS2 ASELONGATUS TEST ATEST1 Ath (130120) Ath (130120) (adapted by B 07042020) auris_lipids AX (adapted by X 22042023) Bacillus subtilis 168 (Hay bacillus) bacteria Bailey Lowry Baureus COL extended test 1 Baureus COL extended test 2 Baureus COL extended test 4 Baureus COL extended test 6 Bert Scammell Bev Steadman biomass (adapted by A 15042019) Biomass Components in E coli (adapted by WL 28102015) Blueberry_Jhonny_CA_UoC_28042026 (adapted by C 28042026) Blueberry_Jhonny_CA_UoC_28042026_IDs (adapted by C 28042026) (adapted by C 28042026) Bos taurus (Cow, Cattle) Bos taurus (Cow, Cattle) (adapted by A 04022024) Bos taurus (Cow, Cattle) (adapted by AK 02022024) C.d. 3 _ colours C.d. 3 _ colours (adapted by L 29112020) C. diphtheriae - tlv1 K0 only C. diphtheriae update LM_JM C. diphtheriae update LM_JM (adapted by L 10122020) Caenorhabditis elegans (Roundworm) Canis familiaris (Dog) Cassie Albertson Caulobacter crescentus NA1000 (KEGG and non-KEGG (Not Mapped)) (adapted by J 09112018) Caulobacter Crescentus NA1000 (metabolism test) (adapted by J 08112018) Caulobacter Crescentus NA1000 (metabolism test3) (adapted by J 08112018) Caulobacter crescentus NA1000 (No Non-Reported Kegg Category) (adapted by J 09112018) Caulobacter crescentus NA1000 (V2: No Non-Reported Kegg Category) (adapted by J 09112018) (adapted by J 09112018) Caulobacter crescentus NA1000 (V3 file KEGG and non-KEGG (Not Mapped)) (adapted by J 09112018) (adapted by J 13112018) Caulobacter crescentus NA1000 (V4 file KEGG (EXCLUDING Not Mapped)) (adapted by J 15112018) Caulobacter crescentus NA1000 (V4 file KEGG and non-KEGG (Not Mapped)) (adapted by J 09112018) (adapted by J 13112018) (adapted by J 14112018) Caulobacter crescentus NA1000 (V5 file KEGG and non-KEGG (Not Mapped)) (adapted by J 09112018) (adapted by J 13112018) (adapted by J 14112018) (adapted by J 19112018) cauris cauris_calbicans cauris_calbicans9 cauris_calbicans_2 cauris_calbicans_7 cauris_calbicans_8 CAZys CCo CCo 3 CCo 4 CD4H_STRICT cd4h_strict2 CDISS3319_03122021 cd_heatmap cd_ISS3319_2 Celinda Schimmel cells cfDNA_human_cell_lineages_soh Chlamydomonas reinhardtii CHO_jointMetSec CHO_jointMetSec2 CHO_joint_color CHO_metTasks CHO_metTasks2 CHO_secTasks cl.v2.tmd Clostridium acetobutylicum ATCC 824 (adapted by JB 07042016) Clostridium difficile strain 630 (adapted by LZ 18082017) Clostridium difficile strain 630 (adapted by W 20112018) clostridium ljungdahlii (adapted by C 25072019) clostridium ljungdahlii v2 clostridium ljungdahlii v3 clostridium ljungdahlii v4 clostridium ljungdahlii v5 clostridium ljungdahlii v8 clostridium ljungdahlii v9 clostridium ljungdahlii v12 clostridium ljungdahlii v13 clostridium_ljungdahlii (adapted by C 26062021) clostridium_ljungdahlii_IPA_v2 clostridium_ljungdahlii_IPA_v3 (adapted by C 27062021) cl_order_phylum Cnec Cnec (adapted by C 21112024) cneoformans_h99_go cneoformans_h99_go2 (adapted by B 13112025) Colleen Goolsby Color_Code_Ecoli_Specific COL_N315_homemade_updated0 Constance Bunton Corynebacterium diphtheriae 19012022 (adapted by J 19012022) Corynebacterium diphtheriae 19012022 (adapted by J 19012022) (adapted by J 19012022) Corynebacterium diphtheriae NCTC13129 Corynebacterium diphtheriae NCTC13129 (adapted 16122020)_test Corynebacterium diphtheriae NCTC13129 (adapted 16122020)_test (adapted by J 30122020) Corynebacterium diphtheriae NCTC13129 - KEGG BRITE and ORTHOLOGY Corynebacterium diphtheriae TRADIS Corynebacterium pseudotuberculosis 12CS0282 Corynebacterium pseudotuberculosis 12CS0282 (adapted by J 07062021) Corynebacterium pseudotuberculosis test 2 Corynebacterium silvaticum W25 (adapted by J 18032021)_revised Corynebacterium silvaticum W25_final_JM cryptococcus neoformans H99 Cutibacterium species 201002-2 Cutibacterium species 201007 (adapted by I 07102020) Cutibacterium species 201009 (adapted by I 09102020) Cutibacterium species 201011-6 (adapted by I 11102020) Cutibacterium species 201011-7 (adapted by I 11102020) Cutibacterium species 201011-8 (adapted by I 11102020) cwf_novhap cyt_112121_3 cyt_112221_2 cyt_120121_1 Dani Bodiford Danio rerio (Zebrafish) Danio rerio (Zebrafish) (adapted by M 22052018) Danio rerio 2 (Zebrafish) (adapted by M 23052018) Danio rerio 4 (Zebrafish) (adapted by MS 10102018) Debora Hawkins Dee Pilcher Deinococcus deserti Desmond Barger DE_meta_itsRNAs_taxonomy (adapted by D 13062019) DK_KMAR_template_v1 DK_PBU_07252025 (adapted by D 25072025) DK_PBU_previous_01-10-2025 DK_PBU_updated_v2_01-10-2025 DK_STUDENT (adapted by D 16012025) DK_STUDENT (adapted by D 16012025) (adapted by D 16012025) DK_VANPO_template_v1 DK_VANPO_template_v2 DK_VANPO_template_v3 (adapted by D 14012026) dm2 Downreg proteins (ga) P. putida Drosophila melanogaster (Fruitfly) (version 1.0) Drosophila melanogaster (Fruitfly) (version 2.0) E.coli_DH10B_w_circuit E.coli_DH10B_w_circuit (adapted by J 31072018) E2F1 Eartha Cunniff EcKEGG_Brite_NoColor EcKEGG_COMBO Eco00001_KEGG_Parsed E coli Metabolite Map (adapted by D 01032021) Ecoli_KEGG_ProteoMAPS_colors Ecoli_KO_map_test_JaH Ecoli_MG1655_KEGG_complete Ecoli_MG1655_KEGG_complete_color Ecoli_MG1655_KEGG_complete_corrected_color Ecoli_plus Ecoli_Test2_JaH ECRGPv2 ECRGPv4 ECRGPv5 ecusttttt2 ecusttttt3 ecusttttt5 Efaecalis Final Efaecalis Final UOH Efaecalis_GO_Final ef_go EHEC (adapted by J 24022022) electro_microbial_production_costs (adapted by S 02102024) electro_microbial_production_costs_1 enteroccocus faecalis (adapted by U 22122025) Escherichia coli Escherichia coli (adapted by AC 20022024) Final_1 Escherichia coli (adapted by R 03022023) Escherichia coli K-12 MG1655 Escherichia coli K-12 MG1655 (mitochondrial biogenesis - folding) Escherichia coli MG1655 Etsuko Rash Eubacterium Limosum Eubacterium limosum Eula McConnan Evie Pantano E_coli_biomass (adapted by WL 28102015) faecalis_KO florum_rast_tmd_V1B_DM florum_rast_tmd_V1B_DM_new_labels florum_rast_tmd_V1C_labels_all_RNAs florum_rast_tmd_V1_DM FMT_human_donors_GO FMT_human_donors_GO_capotal_letters FN1_06292023_PostDown FN_human_Reactome_selected_02262022 FN_KEGG_022122_V2 FN_KEGG_022122_V3 FN_KEGG_022822_V2 FN_reactome_022822_RGB_V6 FN_reactome_022822_RGB_V7 FN_test_021822 FN_test_021822_ReactomeV2 Franklyn Dunkel G.CL.E1 G.CL.E2 G.CL.E3 G.KM.E1 G.KM.E2 G.KM.E3 G.MTQ.E1 G.MTQ.E2 G.MTQ.E3 Gallionellaceae (adapted by AD 28082018) Gallus gallus (Chicken) Gavin Grullon Gel pos GELTEST GELTEST_update (adapted by E 19032024) GEL upd Gena Rosenberger Geobacillus LC300 (adapted by E 19032024) Geobacillus LC300 PPP upd (adapted by E 19032024) Geobacillus LC300 PPP upd2 Geobacillus LC300 upd3 Geobacillus LC300 upd4 Geobacter sulfurreducens PCA Gerardo Matlock global aquaculture composition global water withdrawal GOslim (adapted by O 24092018) gut microbiota MetaCyc pathways - coded gypsum_desert1 gypsum_desert1 (adapted by EQ 09092019) gypsum_metagenome gypsum_metagenome (adapted by E 06122019) gypsum_metagenome (adapted by EQ 09122019) gypsum_metagenome (adapted by G 09122019) gypsum_metagenome (adapted by GM2 06122019) gyp_order_phylum HADiv_2 HADiv_3 HADiv_4 halite_2015_v1 halite_2015_v1 (adapted by E 06122019) halite_2015_v1 (adapted by EB 06122019) Halobacterium salinarum Halobacterium sp. NRC-1 halte_2015_v2 Hanna Dendy Helena Plunkett HierarchyRGB_2 HierarchyTEST historical GPP (adapted by Y 16122020) Home_arthropod_biodiversity Homo sapiens (Human) (version 1.0) Homo sapiens (Human) (version 1.0) (adapted by J 16092024) Homo sapiens (Human) (version 1.0) (adapted by J 16092024.2) Homo sapiens (Human) (version 1.0) (adapted by L 25082020) Homo sapiens (Human) (version 1.0) (adapted by LM 15092020) Homo sapiens (Human) (version 2.0) Homo sapiens (Human) (version 2.0) (adapted by LM 26122020) Hordeum_Lipid (adapted by M 31012022) hormones - mass - 17.01.22 - 2 Hormones v1.0 Hormones v2.1 Hormones v2.3 Hormones v2.4 Human A Human A (adapted by D 02092021) Human A 5.9.21 for OV3 Human A 23.8.21 human cells Human Cells (adapted by R 16092017) Human Cells (adapted by R 23092017) HumanCells (adapted by RS 01072017) HumanCells (adapted by RS 02012017) human cells (adapted by RS 04082019) human cells (adapted by RS 08042019) HumanCells (adapted by RS 22052017) HumanCells (adapted by RS 30122016) 2 Human Cells - Numbers and Turnover (adapted by RS 14082019) Human Cells - Numbers and Turnover 2(adapted by RS 14082019) Human Cells - rates (adapted by RS 10062018) HumanCells2 (adapted by RS 02012017) HumanCells2 (adapted by RS 03042017) HumanCells 2 (adapted by RS 30122016) human cells cfDNA Human Cells rates Human Cells rates (adapted by RS 14082019) human cells rates (RS 20190811) Human Cells rates - 4 layer (02092018) Human Cells rates - no lymph Human Cells rates - plus lymph Human Cells rates - updated Human Cells rates 180902 Human Cells rates 180908 Human Cells rates 180910 Human Cells rates 28102018 Human Cellular Turnover Rates Human Cellular Turnover Rates (adapted by RS 07092020) Human Cellular Turnover Rates (adapted by RS 08092020) Human Cellular Turnover Rates (adapted by RS 10092020) Human Cellular Turnover Rates (adapted by RS 11092020) Human gut microbiota (adapted by E 24022020) Human gut microbiota selected (adapted by EB 26022020) Human gut microbiota selected2 (adapted by EB 26022020) human gut microbiota selected 3 Insect mass Insect mass 2 Isis Cone Jake Kincade Jamaal Cato Jason McEwan Jeff Dewitt Jeffery McNish Jeremy Guinn Jestine Forth Joann Strauss Jodi Krieger Johan_Met Johan_Sec Joni Hentze jose 23 Jose molinus Juan Bracegirdle Junior Fish K.oxytoca (adapted by G 28042026) Katrin Schweitzer Kazuko Edmondstone KEGG (adapted by J 31052024) KEGG-9-2025 (adapted by M 16092025) KEGG-s-neznamou KEGG_AT_colors KEGG_AT_TEST kegg_cl kegg_km kegg_mtq Kenny Skene Kenton Isabelle Klebsiella (adapted by G 23042026) km.v2.tmd KMAR template km_order_phylum KO2Intensity_test KOG database ID (adapted by DB 22032018) Komagataella phaffii Komagataella phaffii (CRG) Komagataella phaffii (CRG) (Adaptation including EggNOG) Komagataella phaffii(new) KO_defense KO_module (adapted by J 02102020) (adapted by J 02102020) KO_treemap101_keggModules_sdahal_test102 (adapted by S 18052020) KO_treemap102_sdahal1990 (adapted by S 09042020) (adapted by S 09042020) KO_treemap104_keggModules_sdahal (adapted by S 18052020) KO_treemap104_sdahal1990 (adapted by S 09042020) KO_treemap105_keggModules_sdahal (adapted by S 18052020) KO_treemap105_sdahal1990 (adapted by S 09042020) KO_treemap106_sdahal1990 (adapted by S 09042020) KO_treemap_103_sdahal1990 (adapted by S 09042020) KO_treemap_keggModules_sdahal_101 (adapted by S 31052020) KO_treemap_sdahal1990 (adapted by S 09042020) L.A_BH8 L.A_BH9 (new colors1) L.A_BH10.1 L.A_BH10.2 LA (adapted by C 24072025) LA_CA (adapted by C 20092024) Leanne Friese leeo leeo (adapted by L 08102018) leeo5 leeo6 leeo6.1 leeo8 Leptospira interrogans serovar Copenhageni lipids Lipids-nicotiana Lipids-nicotiana (adapted by M 17012025) LIPIDS_WA Listeria monocytogenes EGD-e liu_patway_level2 Livestock Population (adapted by G 08092020) livestock types (adapted by G 08092020) (adapted by G 08092020) Lona Dilke Lovie Barak Lucas Loos Lupinus albus (adapted by C 04072025) LupinusAlbusHufnagelCA1 LupinusAlbusHufnagelCA2 LupinusAlbusMito LupinusAlbusMito5 LupinusAlbusMito6 LupinusAlbusMito7 lymphoc (adapted by RS 23052017) lymphocytes (adapted by RS 23052017) Lynwood Westmacott M024H_ALLIN M024H_ALLIN (adapted by LM 28012021) M024H_PROTEOHEATMAP M024H_pval M024H_PVAL_OK M04H_ALLIN M04H_ALLIN (adapted by LM 28012021) M04H_PROTEOHEATMAP M04H_PVAL M04H_PVAL_OK Malinda Headrick mammal biomass Mammals Order Mammals unique Mammals unique (adapted by EK 06112019) (adapted by EK 06112019) Mammals unique (adapted by EK 06112019) (adapted by EK 06112019) (adapted by EK 09122019) Mammals unique (adapted by EK 11092019) Mammals unique (adapted by EK 16092019) (adapted by EK 16092019) Maple Andre Maricruz Blankenship marine (adapted by R 27052026) Marjorie Flores Martha Tomasini mar_animals_biomass mar_biomass1 Mat 1 (adapted by G 14052017) Mat 2 mAT 4.1 Mat 4.2 mAT 5.1 MAT 5.2 May Moriarty Mesoplasma florum (DM 19-09-06 V2B) Mesoplasma florum (DM 19-09-09 V2C1) Mesoplasma florum (DM 19-09-09 V2D1) Mesoplasma florum (JCL 08-12-2020 V2) (adapted by JCL 12082020) Mesoplasma florum (JCL 08-18-2020 V2) (adapted by JCL 18082020) (adapted by JCLUC 18082020) Mesoplasma florum (JCL 08-18-2020 V3) Mesoplasma florum (JCL 10-18-2019 V1) (adapted by JCL 18102019) Mesoplasma florum L1 Mesoplasma florum L1 (19-09-06 DM V2B1 new) Mesoplasma florum L1 (19-09-16 DM V3A1) Mesoplasma florum L1 (adapted by JCL 12082019) Mesoplasma florum L1 reduced v6 (adapted by JCLUC 21092020) Mesoplasma_florum_L1-DM-23-01-2024-RED-DEG-FIXED Mesoplasma_florum_L1-DM-23-01-2024-UP-A6S-RED-DEG Mesoplasma_florum_L1-DM-23-01-2024-UP-C6S-RED-DEG Mesoplasma_florum_L1_DM_05-02-2024-UP-A6S-DEG-V3 Mesoplasma_florum_L1_DM_05-02-2024-UP-A6S-V3-FIXED Mesoplasma_florum_L1_DM_05-02-2024-UP-C6S-DEG-V3 Mesoplasma_florum_L1_DM_22-01-2024_colorfixed Mesoplasma_florum_V4_tree_UP_A6S_RED Mesoplasma_florum_V4_tree_UP_A6S_RED_FIXED Mesoplasma_florum_V4_tree_UP_C6S_RED Mesoplasma_florum_V4_tree_UP_C6S_RED_FIXED Mesoplasma_florum_V4_tree_UP_GLU_RED_FIXED Mesoplasma_florum_V4_tree_UP_MAN_RED_FIXED Meso_A6S_UP_RED_TPM_V5 Meso_C6S_UP_RED_TPM_V5 meta_sRNA_all_try3 (adapted by D 09042019) (adapted by D 09042019) meta_sRNA_antisense_try3 meta_sRNA_intergenic_try2 Methanogen_wg (adapted by G 16052020) Methanogen_wg (adapted by G 17052020) Methanogen_wg (adapted by G 29042020) Methanogen_wg1 (adapted by G 17052020) Methanogen_wg_full (adapted by G 17052020) methylococcus tel vs calysta - 2023-05-28b Microbial Production costs microbial_costs_1 microbial_costs_6 Microcystis aeruginosa NIES 843 MIP_guilds MIP_guilds_wcol MIP_guilds_wcol_habname Mirta Craddock mitochondria biomass modelMech Monserrate Bate Mouse_recombinant Mouse_recombinant_ck (adapted by C 10092018) mtm (adapted by L 16062021) mtq.v2.tmd mtq_order_phylum Mus musculus (adapted by Shangzhong Li - 20150815) Mus musculus (adapted by SL - 20150824) Mus musculus (adapted by SL 20151219) Mus musculus (Mouse) (version 1.0) Mus musculus (Mouse) (version 2.0) Mus musculus (Mouse) (version 2.0) (adapted by L 23052018) Mycobacterium tuberculosis H37Rv (Tubercle bacillus) Mycoplasma genitalium G37 Mycoplasma pneumoniae Mycoplasma pneumoniae M129 NCBI (adapted by T 20012021) NCTC_ SA NF 20210924 GC NF test 2 no (adapted by M 27022025) octopus (adapted by WL 26102015) OSR005 (adapted by HM 27052026) Ovies Gaby PAO1_230719 PAO1_240719 PBU_08072025_template_v1 PBU_08072025_template_v3 PBU_90_09242025 PBU_DK_102425_2 PBU_DK_10072025-3 PBU_DK_combined_v5 PBU_DK_combined_v8 PBU_DK_v1 PBU_DK_v2 PBU_DK_v3 PBU_DK_v4 (adapted by D 16082024) PBU_template_v2_WO_NotMapped PBU_template_v3_WO_notmapped_firstletter PBU_v9_0913_new Pichia pastoris Pichia pastoris (adapted by TRA 25032019) Pichia pastoris (CRG tx) Pichia pastoris (CRG tx) (PE, HSA) Pichia pastoris 3 Pichia pastoris CBS7435 Pichia pastoris CBS7435 (ascNOG) Pichia pastoris CBS7435 (ascNOG) (all prot) Pichia pastoris CBS7435 (PichiaPaper_lowlyExpressed_HSA) Pichia pastoris CBS7435 (ppaper by TRA) Pichia pastoris CBS7435 (ppaper by TRA with HSA) Pichia pastoris CBS7435 HSA(TRA 190627 II) Pichia pastoris CBS7435 HSA (TRA 190627) Plankton functional groups (adapted by FL 23092020) Plankton functional groups 2 (adapted by FL 23092020) Plankton functional groups 3 (adapted by FL 08122020) Plankton functional groups 4 (adapted by F 20032021) Plankton functional types 5 plastidfuncat2 (adapted by H 12022020) plastid funcats (adapted by H 12022020) positest Prochlorococcus marinus MED4 Prochlorococcus_MIT9301_06_25_24 Prochlorococcus_MIT9301_06_25_24_v2 Prochlorococcus_MIT9301_06_26_24_v3 protein (09012020) (adapted by BH 09012020) Proteomaps JOSE-GABY prueba prueba blanco 2308 Pseudomonas aeruginosa PAO1 Pseudomonas aeruginosa PAO1 (adapted by S 11072019) Pseudomonas aeruginosa PAO1 (adapted by S 16072019) Pseudomonas aeruginosa PAO1 (adapted by S 18072019) Pseudomonas aeruginosa PAO1 (adapted by S 19072019) Pseudomonas aeruginosa PAO1 (adapted by S 20072019) Pseudomonas aeruginosa PAO1 (adapted by S 21072019) Pseudomonas aeruginosa PAO1 (adapted by S 23072019) Pseudomonas putida KT2440 KO (adapted by N 12072024) Rattus norvegicus (Rat) R E E REE tree REE_tree_colors RHADiv Ribosomal_Proteins_AT_v0.1 Ribosomal_Proteins_AT_v0.3 Rodger Farquharson Roma Sealey Rosetta Nickson Ruben Orton Rubye Darr S-molecules S.plymuthica Sabrina Baudinet saccharomyces cerevisiae (adapted by TRA 03022019) Saccharomyces cerevisiae (adapted by TRA 03122018) Saccharomyces cerevisiae (Baker's yeast) (version 1.0) Saccharomyces cerevisiae (Baker's yeast) (version 2.0) Saccharomyces cerevisiae (eggNOG) Saccharomyces cerevisiae GO-Slim (adapted by TRA 03122018) Saccharomyces cerevisiae S288C Saccharomyces cerevisiae S288C (ascNOG) Saccharomyces cerevisiae S288C (ascNOG) (all proteins) Saccharomyces cerevisiae S288C (HSA and PE) Saccharomyces cerevisiae S288C (PichiaPaper_lowExpressed) Saccharomyces cerevisiae S288C (ppaper by TRA) Saccharopolyspora erythraea Saccharopolyspora erythraea(7) Saccharopolyspora erythraea1 Saccharopolyspora erythraea2025.4.3(6) Sallie Munson Salmonella enterica subsp. enterica serovar Typhimurium LT2 Salmonella enterica subsp. enterica serovar Typhimurium LT2 the SEED (adapted by SWCD 05072018) Salmonella enterica subsp. enterica serovar Typhimurium LT2 the SEED v2 (adapted by SWCD 05072018) salmo salar - FW-LD-NF-200-vs-50b - 2023-05-16 salmo salar - FW-LD-SF-200-vs-50 - 2023-05-16 salmo salar - FW-LL-NF-350-vs-200 - 2023-05-16 salmo salar - SW-LD-NF-50-vs-control-LD-control-0 - 2023-05-16 salmo salar - SW-LD-NF-200-vs-50 - 2023-05-16 salmo salar - SW-LD-NF-350-vs-200 - 2023-05-16 salmo salar - SW-LD-SF-50-vs-control-LD-control-0 - 2023-05-16 salmo salar - SW-LD-SF-200-vs-50 - 2023-05-16 salmo salar - SW-LL-NF-350-vs-200 - 2023-05-16 salmo salar - SW-LL-SF-200-vs-50 - 2023-05-16 Sam Chappell sandstone.africa sandstone.antarctica sandstone.namerica SB_KMAR_v1_01-14-2026 SC-hm-1 SC-hm-1 (adapted by H 08102020) SC-hm-1 (adapted by H 08102020) (adapted by H 08102020) SC-hm-GFP2 SC-hm-GFP3 SC-hm-GFP5 Schizosaccharomyces pombe (Fission yeast) (version 1.0) Schizosaccharomyces pombe (Fission yeast) (version 2.0) Sc_hm_moxYG Sc_hm_v2_wall2 Sc_v2_hm_GFP SE7942 Sean Darrell SedMit_BH SedMit_BH2 SedMit_BH3 Selma Caesar Selongatus (adapted by A 07022021) SHADiv Shanice Lentz Shanna Hesson Shewanella oneidensis Shigella dysenteriae Sd197 Shigella flexneri 2457T (serotype 2a) SH_HumanCellLineages Sienna Costantino Solo compl solo complem 3 solo complem 4 StahpCOL_N315_paper StaphCol_N315_Homemade StaphCOL_N315_homemade StaphCOL_N315_homemade_16may StaphCOL_N315_homemade_complete Staphylococcus aureus COL Staphylococcus aureus COL2 (adapted by KD 04022025) Staphylococcus aureus COL2 (adapted by KD 04022025) (adapted by K 02042025) Staphylococcus aureus COL N315 completed Staphylococcus aureus COL N315 st Staphylococcus aureus N315 Staph_COL_N315_complete Stella Crosby Stenotrophomonas (adapted by HM 13112018) Streptococcus pyogenes MGAS5005 (serotype M1) Streptomyces coelicolor suero oveja (adapted by G 01022017) suero oveja 2 suero oveja 3 SUERO OVEJA 4 suero oveja 7 Suero oveja 9 susMetSec Sus scrofa (Pig) Synechococcus elongatus sp. PCC7942 Synechococcus elongatus sp. PCC7942_no_mitochondrial_biogenesis Synechococcus sp.PCC 7002 6 Synechococcus sp.PCC 7002 8 Synechococcus sp.PCC 7002_2 Synechocystis sp. 6803 Synechocystis species 6803 (Cyanobacterium) Tammie Clapp Taxa biofilm L (adapted by DB 14032018) taxonomy MP (adapted by DB 20032018) taxonomy MP (adapted by DB 20032018) (adapted by DB 21032018) Taylor Baylee template 371017 template 371017 2 template 371017 2 2308 colors (adapted by G 15102017) template 371017 2 per colors template 371017 2 WADC colors TEMPPLATE371017 3 ter_animal_biomass ter_animal_biomass_wcol ter_animal_biomass_wcol1 ter_biomass_wcol test Test.Cd_Jm test3 test6 testA testB Test GGE 4 Test GGE 6 Test GGE 7 Test GGE 7.1 testkd testKD2 testkd3 testkd4 testkd5 testkd_lastest testL testL (adapted by E 07022019) testL (adapted by E 07022019) (adapted by E 07022019) testL (adapted by E 07022019) (adapted by E1 07022019) testL (adapted by E1 07022019) testL (adapted by E1 07022019) (adapted by E1 07022019) testL (adapted by EE 07022019) Test taxa MP (adapted by DB 13032018) Thalassiosira pseudonana Thermococcus gammatolerans TIGRFAM (adapted by D 12032018) TIGRFAM (adapted by D 12032018) (adapted by D 12032018) TIGRFAM with IDs (adapted by DB 25032018) TOKO_test_1 tokyo Torri McCary Trichoderma reesei RUT C-30 (Yeast, Eggnog, HSA and PE) Trichodesmium_no_top_level (adapted by H 01122022) UHADiv unknown (adapted by EBA 29092024) unknown-cellcomp (adapted by EBA 29092024) unknown-molfun (adapted by EBA 29092024) Upreg proteins (ga) P. putida V.album 250226 season (adapted by L 25022026) Val Daniel VA new1 VA new2 VA new3 VA season (adapted by L 18122025) VAtest (adapted by L 01032026) Va test new Vibrio parahaemolyticus RIMD 2210633 v7 Vince Porras Viscum album season wbp_cwf wbp_zhang Werner Soule Will Tom World biomass (adapted by Y 17072016) World biomass (adapted by Y 17072016) (adapted by Y 17072016) World biomass with subdivision (adapted by YBO 13092016) World biomass with viruses (adapted by YBO 24072016) World environment biomass (adapted by YBO 24072016) world kingdom biomass world kingdom biomass (adapted by N 18092018) Xenopus tropicalis (Western clawed frog) Yarrowia lipolytica (eggNOG) Yarrowia lipolytica ASM252v1 Yarrowia lipolytica ASM252v1 (ascNOG) Yarrowia lipolytica ASM252v1 (ascNOG) (all prot and all mRNA) Zea mays (Maize, Indian Corn) Zita Butts _CB_treemap_20260529_v1_005 _hmartin_treemap_OSR005_20250925 _hmartin_treemap_OSR005_20250925_v3 _hmartin_treemap_OSR005_20250929_v4 _hmartin_treemap_OSR005_20251013 _hmartin_treemap_OSR005_20251017_v7 _JH_test_reupload _metaP_20260526_005 _metaP_20260527_annotatev1
