Bionic Visualizations
Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
XIK!!!
Escherichia coli
XIK!!!
15262023724031
XIK_Whole_proteome
Escherichia coli
XIK_Whole_proteome
15261224492988
no comment
Synechocystis species 6803 (Cyanobacterium)
no comment
15245820819870
2
Synechocystis species 6803 (Cyanobacterium)
2
15245818644023
6
Synechocystis species 6803 (Cyanobacterium)
6
15245818452831
4
Synechocystis species 6803 (Cyanobacterium)
4
15245817872491
3
Synechocystis species 6803 (Cyanobacterium)
3
15245817151360
1
Synechocystis species 6803 (Cyanobacterium)
1
15245816693193
1
Synechocystis species 6803 (Cyanobacterium)
1
15245816329281
3
Synechocystis species 6803 (Cyanobacterium)
3
15245743182890
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
Arabidopsis thaliana (Mousear cress)
no comment
15266769344735
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15266504441819
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15266504416608
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15266458944596
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15266457532151
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15266345150864
F5 test1
Homo sapiens (Human)
F5 test1
15265422822302
F1 Test1
Homo sapiens (Human)
F1 Test1
15265419158705
no comment
Homo sapiens (Human)
no comment
15265415642524
no comment
Saccharomyces cerevisiae (Baker's yeast)
no comment
15263954327222
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
browse
edit tmd data?
Insert an example?
source?
db link?
comment?
user name?
user template previews
no comment
E.coli_DH10B_w_circuit
no comment
15257594987923
no comment
TIGRFAM with IDs (adapted by DB 25032018)
no comment
15219832357560
no comment
KOG database ID (adapted by DB 22032018)
no comment
15217256839236
no comment
taxonomy MP (adapted by DB 20032018) (adapted by DB 21032018)
no comment
15216284191800
no comment
taxonomy MP (adapted by DB 20032018)
no comment
15215843943681
no comment
Taxa biofilm L (adapted by DB 14032018)
no comment
15210499670233
no comment
Test taxa MP (adapted by DB 13032018)
no comment
15209467258892
no comment
TIGRFAM (adapted by D 12032018) (adapted by D 12032018)
no comment
15208711156007
no comment
TIGRFAM (adapted by D 12032018)
no comment
15208692484636
no comment
TEMPPLATE371017 3
no comment
15163104331825
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
Mus musculus (adapted by SL 20151219)
no comment
15263239863469
no comment
E.coli_DH10B_w_circuit
no comment
15257628374145
no comment
Mus musculus (adapted by SL 20151219)
no comment
15252423365730
no comment
KOG database ID (adapted by DB 22032018)
no comment
15222791506019
no comment
KOG database ID (adapted by DB 22032018)
no comment
15222790130387
no comment
KOG database ID (adapted by DB 22032018)
no comment
15222788394880
no comment
KOG database ID (adapted by DB 22032018)
no comment
15222786528640
no comment
KOG database ID (adapted by DB 22032018)
no comment
15222784941007
no comment
KOG database ID (adapted by DB 22032018)
no comment
15222783179435
no comment
KOG database ID (adapted by DB 22032018)
no comment
15222782015979
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON GmbH.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
Privacy Policy