Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
ppk-EFE-light 300-2
Synechocystis species 6803 (Cyanobacterium)
ppk-EFE-light 300-2
17933133917448
ppk-light 300-2
Synechocystis species 6803 (Cyanobacterium)
ppk-light 300-2
17933133603757
phaEC-EFE light 300-2
Synechocystis species 6803 (Cyanobacterium)
phaEC-EFE light 300-2
17933133350840
phaEC-light 300-2
Synechocystis species 6803 (Cyanobacterium)
phaEC-light 300-2
17933133055920
EFE2-light 300-2
Synechocystis species 6803 (Cyanobacterium)
EFE2-light 300-2
17933132827570
EFE1-light 300-2
Synechocystis species 6803 (Cyanobacterium)
EFE1-light 300-2
17933132302411
WT-light 300_2
Synechocystis species 6803 (Cyanobacterium)
WT-light 300_2
17933117770005
ppk-EFE-light 300
Synechocystis species 6803 (Cyanobacterium)
ppk-EFE-light 300
17933003114757
ppk-light 300
Synechocystis species 6803 (Cyanobacterium)
ppk-light 300
17933002907776
phaEC-EFE-light300
Synechocystis species 6803 (Cyanobacterium)
phaEC-EFE-light300
17933002418529
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
Homo sapiens (Human)
no comment
17943246736628
no comment
Homo sapiens (Human)
no comment
17943246614709
no comment
Homo sapiens (Human)
no comment
17942453639885
no comment
Homo sapiens (Human)
no comment
17942451417100
oe
Mus musculus (Mouse)
oe
17942057653785
sh
Mus musculus (Mouse)
sh
17942038664482
MOE-kong
Mus musculus (Mouse)
MOE-kong
17942037896563
N4T8
Homo sapiens (Human)
N4T8
17942023910688
R3M9
Homo sapiens (Human)
R3M9
17942022930520
X7C2
Homo sapiens (Human)
X7C2
17942022400088
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
browse
edit tmd data?
Insert an example?
source?
db link?
comment?
user name?
user template previews
no comment
2026-11-08 test (adapted by EBA 08112026)
no comment
17940517926338
no comment
2026-11-07-mf (adapted by EBA 07112026)
no comment
17940507850633
no comment
2026-11-07-cc (adapted by EBA 07112026)
no comment
17940507353973
no comment
Homo sapiens (Human) (version 2.0) (adapted by 2 21102026)
no comment
17925455822918
no comment
Ecoli_MG1655_KEGG_191026
no comment
17924035105540
ribosomes
Mmar_2610 (adapted by F 15102026)
ribosomes
17921316643559
ribosomes
Tki_2610 (adapted by F 15102026)
ribosomes
17921314583976
ribosomes
Bsub_2610_2 (adapted by F 15102026)
ribosomes
17921312704836
ribosomes
Bsub_2610 (adapted by F 15102026)
ribosomes
17921312195895
matching anntation
Ecol_normal (adapted by F 15102026)
matching anntation
17921116062994
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
Homo sapiens (Human) (version 2.0) (adapted by LM 26122020)
no comment
17943250719387
no comment
2026-11-08 test (adapted by EBA 08112026)
no comment
17941492954327
no comment
2026-11-07-mf (adapted by EBA 07112026)
no comment
17940517647668
no comment
2026-11-07-cc (adapted by EBA 07112026)
no comment
17940516896036
no comment
Arabidopsis thaliana (29112019)colors7
no comment
17930581603976
no comment
Arabidopsis thaliana (29112019)colors7
no comment
17928719313898
no comment
Arabidopsis thaliana (29112019)colors7
no comment
17927572639434
no comment
Arabidopsis thaliana (29112019)colors7
no comment
17927538251384
no comment
Ecoli_MG1655_KEGG_191026
no comment
17925587672814
no comment
Ecoli_MG1655_KEGG_191026
no comment
17925580842620
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
Privacy Policy