Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
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cushioning?
S16 treatment
Homo sapiens (Human)
S16 treatment
17849986556579
S15(3) treatment
Homo sapiens (Human)
S15(3) treatment
17849984528162
S14(1) treatment
Homo sapiens (Human)
S14(1) treatment
17849980428036
S7.3 treatment
Homo sapiens (Human)
S7.3 treatment
17849974884104
S11 treatment
Homo sapiens (Human)
S11 treatment
17849972242657
No treatment Scaffolds first set
Homo sapiens (Human)
No treatment Scaffolds first set
17849967613660
S9 treatment
Homo sapiens (Human)
S9 treatment
17849966240186
S10 treatment
Homo sapiens (Human)
S10 treatment
17849958873390
test Wegener 2010
Synechocystis species 6803 (Cyanobacterium)
test Wegener 2010
17829226767613
no comment
Homo sapiens (Human)
no comment
17793877177166
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
S10 treatment
Homo sapiens (Human)
S10 treatment
17849962752826
S10 treatment
Homo sapiens (Human)
S10 treatment
17849955054004
S10 treatment
Homo sapiens (Human)
S10 treatment
17849954570555
S9 treatment
Homo sapiens (Human)
S9 treatment
17849935498020
No treatment Scaffolds first set
Homo sapiens (Human)
No treatment Scaffolds first set
17849935272424
UP_FS
Homo sapiens (Human)
UP_FS
17848810566299
Down_FS
Homo sapiens (Human)
Down_FS
17848810326060
Total_FS
Homo sapiens (Human)
Total_FS
17848808625172
UOH Total
Mus musculus (Mouse)
UOH Total
17848681355149
UOH F_Up
Mus musculus (Mouse)
UOH F_Up
17848679288663
Before setting up an individual treemap template these issues need to be considered.
treemap name?
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source?
db link?
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user name?
user template previews
no comment
Pseudomonas putida KT2440 270726b
no comment
17851526166165
no comment
Pseudomonas putida KT2440 27072026
no comment
17851517835778
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17849343317005
no comment
Pseudomonas putida KT2440 150726b (adapted by S 20072026)
no comment
17845395085659
no comment
Pseudomonas_putida_KT2440_160726b
no comment
17842056055955
no comment
Pseudomonas_putida_KT2440_160726
no comment
17841846863109
no comment
Pseudomonas putida KT2440 150726b
no comment
17841268243443
no comment
Pseudomonas putida KT2440 KO (adapted by N 12072024) (adapted by S 15072026)
no comment
17841083559100
YALI
YALI tib
YALI
17834168142772
YALI
YALI tib
YALI
17834167233057
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
Pseudomonas putida KT2440 270726b
no comment
17851527512770
no comment
Pseudomonas putida KT2440 270726b
no comment
17851527155147
no comment
Pseudomonas putida KT2440 27072026
no comment
17851520611921
no comment
Pseudomonas putida KT2440 27072026
no comment
17851520404872
no comment
L.A_BH10.2
no comment
17846417898815
no comment
L.A_BH10.2
no comment
17846416379643
no comment
L.A_BH10.2
no comment
17846413921951
no comment
L.A_BH10.2
no comment
17846407277477
no comment
L.A_BH10.2
no comment
17846404399056
no comment
L.A_BH10.2
no comment
17846401486386
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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