Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
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or data?
Insert an example?
Please consider!
cushioning?
no comment
Escherichia coli
no comment
17656346492051
no comment
Escherichia coli
no comment
17656289288927
no comment
Escherichia coli
no comment
17656280971538
no comment
Escherichia coli
no comment
17656280688662
z3
Homo sapiens (Human)
z3
17654533772199
Z2
Homo sapiens (Human)
Z2
17654532334841
Z
Homo sapiens (Human)
Z
17654509989037
z1
Homo sapiens (Human)
z1
17654466768314
zxy1
Homo sapiens (Human)
zxy1
17654465702593
zxy
Homo sapiens (Human)
zxy
17654460608610
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
Homo sapiens (Human)
no comment
17659032990475
aa
Homo sapiens (Human)
aa
17658739900138
Trial6_53ul
Homo sapiens (Human)
Trial6_53ul
17658554908129
Trial6_27ul
Homo sapiens (Human)
Trial6_27ul
17658554507366
Trial6_15ul
Homo sapiens (Human)
Trial6_15ul
17658553319411
All_prot_PostLysVol_Trial_6
Homo sapiens (Human)
All_prot_PostLysVol_Trial_6
17658551806087
Down_Adipo_BurnSkin_vs_Skin_d5_significant
Homo sapiens (Human)
Down_Adipo_BurnSkin_vs_Skin_d5_significant
17657848099194
no comment
Arabidopsis thaliana (Mousear cress)
no comment
17657647360189
no comment
Arabidopsis thaliana (Mousear cress)
no comment
17657645893717
no comment
Arabidopsis thaliana (Mousear cress)
no comment
17657645603528
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
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edit tmd data?
Insert an example?
source?
db link?
comment?
user name?
user template previews
no comment
ef_go
no comment
17658193007144
no comment
GO_faecalis
no comment
17655740916938
no comment
GO_faecalis
no comment
17655740916937
no comment
GO_faecalis
no comment
17655740916936
no comment
E_faecalis v583 UOH
no comment
17655731404756
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17655233086303
GO complete genome
Efaecalis Final UOH
GO complete genome
17654936421311
no comment
Efaecalis Final
no comment
17654928112030
no comment
Efaecalis_GO_Final
no comment
17654923648798
no comment
Efaecalis_GO_color
no comment
17654879311874
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
Cef Up
ef_go
Cef Up
17658202685953
Cef Down
ef_go
Cef Down
17658202205609
Van UP
ef_go
Van UP
17658201763242
Van Down
ef_go
Van Down
17658201450274
SSA_mean
saccharomyces cerevisiae (adapted by TRA 03022019)
SSA_mean
17657963793961
no comment
Saccharomyces cerevisiae S288C
no comment
17657960881289
Cef Down
Efaecalis Final UOH
Cef Down
17655709575450
Cef Up
Efaecalis Final UOH
Cef Up
17655709542468
Van Down
Efaecalis Final UOH
Van Down
17655709499095
Van Up
Efaecalis Final UOH
Van Up
17655709430890
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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