Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
comment?
tsv file?
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or data?
Insert an example?
Please consider!
cushioning?
lgs 300
Synechocystis species 6803 (Cyanobacterium)
lgs 300
17744742470233
sps efe 300
Synechocystis species 6803 (Cyanobacterium)
sps efe 300
17744740968832
sps 300
Synechocystis species 6803 (Cyanobacterium)
sps 300
17744730778471
glgc efe 300
Synechocystis species 6803 (Cyanobacterium)
glgc efe 300
17744727428467
glgc 300
Synechocystis species 6803 (Cyanobacterium)
glgc 300
17744719745189
efe 300
Synechocystis species 6803 (Cyanobacterium)
efe 300
17744719143204
wt 300
Synechocystis species 6803 (Cyanobacterium)
wt 300
17744718520989
lgs 200
Synechocystis species 6803 (Cyanobacterium)
lgs 200
17744717790223
sps EFE 200
Synechocystis species 6803 (Cyanobacterium)
sps EFE 200
17744717305574
sps 200
Synechocystis species 6803 (Cyanobacterium)
sps 200
17744716901437
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
Homo sapiens (Human)
no comment
17745152535842
no comment
Homo sapiens (Human)
no comment
17745152352991
no comment
Homo sapiens (Human)
no comment
17745145857125
WT200
Synechocystis sp. 6803
WT200
17744705879323
no comment
Synechocystis sp. 6803
no comment
17744671269385
no comment
Synechocystis sp. 6803
no comment
17744671104749
no comment
Homo sapiens (Human)
no comment
17744608698131
Exponential Up Expressed
Pseudomonas aeruginosa PAO1
Exponential Up Expressed
17743840016423
Exponential Down Expressed
Pseudomonas aeruginosa PAO1
Exponential Down Expressed
17743839063232
no comment
Homo sapiens (Human)
no comment
17743642523103
Before setting up an individual treemap template these issues need to be considered.
treemap name?
upload tmd file?
browse
edit tmd data?
Insert an example?
source?
db link?
comment?
user name?
user template previews
no comment
Komagataella phaffii(new)
no comment
17735471296432
no comment
Komagataella phaffii
no comment
17734868122264
no comment
VAtest (adapted by L 01032026)
no comment
17723897989527
no comment
V.album 250226 season (adapted by L 25022026)
no comment
17720382251030
no comment
Eubacterium limosum
no comment
17694827072328
no comment
Eubacterium Limosum
no comment
17694822520491
just simple test with DK
SB_KMAR_v1_01-14-2026
just simple test with DK
17684218848679
no comment
DK_VANPO_template_v3 (adapted by D 14012026)
no comment
17684130916293
no comment
enteroccocus faecalis (adapted by U 22122025)
no comment
17664314612752
no comment
VA season (adapted by L 18122025)
no comment
17660494360004
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
KEGG_AT_TEST
no comment
17743580536881
MetEx_vs_MetBasal
faecalis_KO
MetEx_vs_MetBasal
17737533260246
MetDef_vs_MetBasal
faecalis_KO
MetDef_vs_MetBasal
17737524868342
ST2319
Komagataella phaffii(new)
ST2319
17735650928704
ST2337
Komagataella phaffii(new)
ST2337
17735580497594
ST2320
Komagataella phaffii(new)
ST2320
17735580132748
ST2319
Komagataella phaffii(new)
ST2319
17735579585166
ST2282
Komagataella phaffii(new)
ST2282
17735575680948
example
Komagataella phaffii(new)
example
17735530541111
no comment
Komagataella phaffii
no comment
17734877340282
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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