Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
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cushioning?
E gltS
Escherichia coli
E gltS
17705289767478
WT E
Escherichia coli
WT E
17705289483616
no comment
Homo sapiens (Human)
no comment
17702169860246
A-P liver down 10%
Mus musculus (Mouse)
A-P liver down 10%
17701223302985
A-P liver up 10%
Mus musculus (Mouse)
A-P liver up 10%
17701223026255
no comment
Homo sapiens (Human)
no comment
17683350945296
no comment
Arabidopsis thaliana (Mousear cress)
no comment
17676392922616
no comment
Arabidopsis thaliana (Mousear cress)
no comment
17676392534336
no comment
Arabidopsis thaliana (Mousear cress)
no comment
17676389342143
no comment
Arabidopsis thaliana (Mousear cress)
no comment
17676300172395
organism?
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cool test
Homo sapiens (Human)
cool test
17731597287599
no comment
Homo sapiens (Human)
no comment
17729793363547
no comment
Aliivibrio fischeri ES114
no comment
17729210964067
no comment
Aliivibrio fischeri ES114
no comment
17729147305358
no comment
Mus musculus (Mouse)
no comment
17727090800672
no comment
Mus musculus (Mouse)
no comment
17726431782559
no comment
Homo sapiens (Human)
no comment
17726357111826
no comment
Homo sapiens (Human)
no comment
17726354389305
no comment
Mus musculus (Mouse)
no comment
17726207461126
no comment
Mus musculus (Mouse)
no comment
17726207461125
Before setting up an individual treemap template these issues need to be considered.
treemap name?
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user template previews
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17730040798594
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17729396075411
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17729346780894
no comment
VAtest (adapted by L 01032026)
no comment
17723897989527
no comment
V.album 250226 season (adapted by L 25022026)
no comment
17720382251030
no comment
Eubacterium limosum
no comment
17694827072328
no comment
Eubacterium Limosum
no comment
17694822520491
just simple test with DK
SB_KMAR_v1_01-14-2026
just simple test with DK
17684218848679
no comment
DK_VANPO_template_v3 (adapted by D 14012026)
no comment
17684130916293
no comment
enteroccocus faecalis (adapted by U 22122025)
no comment
17664314612752
organism?
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tsv file?
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or data?
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Please consider!
cushioning?
down Cu
enteroccocus faecalis (adapted by U 22122025)
down Cu
17727366024944
up Cu
enteroccocus faecalis (adapted by U 22122025)
up Cu
17727365605143
T Cu
enteroccocus faecalis (adapted by U 22122025)
T Cu
17727364298660
T
enteroccocus faecalis (adapted by U 22122025)
T
17727360926515
no comment
Efaecalis_GO_Final
no comment
17727356299318
no comment
Efaecalis Final UOH
no comment
17727354276750
ko up
faecalis_KO
ko up
17727282712955
C1
VAtest (adapted by L 01032026)
C1
17723911990843
CL10
V.album 250226 season (adapted by L 25022026)
CL10
17720982455032
CL9
V.album 250226 season (adapted by L 25022026)
CL9
17720982246268
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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