Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
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tsv file?
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cushioning?
no comment
Homo sapiens (Human)
no comment
17683350945296
no comment
Arabidopsis thaliana (Mousear cress)
no comment
17676392922616
no comment
Arabidopsis thaliana (Mousear cress)
no comment
17676392534336
no comment
Arabidopsis thaliana (Mousear cress)
no comment
17676389342143
no comment
Arabidopsis thaliana (Mousear cress)
no comment
17676300172395
no comment
Homo sapiens (Human)
no comment
17660696308618
no comment
Escherichia coli
no comment
17656346492051
no comment
Escherichia coli
no comment
17656289288927
no comment
Escherichia coli
no comment
17656280971538
no comment
Escherichia coli
no comment
17656280688662
organism?
comment?
tsv file?
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or data?
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cushioning?
Shena Encriched in Winter cutoff 0.8 *(-1)
Homo sapiens (Human)
Shena Encriched in Winter cutoff 0.8 *(-1)
17696795623247
Sheba Enriched in Summer cutoff 0.8
Homo sapiens (Human)
Sheba Enriched in Summer cutoff 0.8
17696793341997
no comment
Mus musculus (Mouse)
no comment
17696718632693
no comment
Prochlorococcus marinus MED4
no comment
17696301559850
no comment
Homo sapiens (Human)
no comment
17695636831927
HSP90 up AHA
Aliivibrio fischeri ES114
HSP90 up AHA
17695615056136
no comment
Rattus norvegicus (Rat)
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17695303637121
no comment
Rattus norvegicus (Rat)
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17695289367703
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Homo sapiens (Human)
no comment
17695247903255
no comment
Homo sapiens (Human)
no comment
17695241907914
Before setting up an individual treemap template these issues need to be considered.
treemap name?
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user name?
user template previews
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Eubacterium limosum
no comment
17694827072328
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Eubacterium Limosum
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17694822520491
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F2
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17694820712226
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F
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17694819479188
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1 (adapted by L 27012026)
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17694817763172
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Gui
no comment
17694808121436
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17693303336086
just simple test with DK
SB_KMAR_v1_01-14-2026
just simple test with DK
17684218848679
no comment
DK_VANPO_template_v3 (adapted by D 14012026)
no comment
17684130916293
no comment
enteroccocus faecalis (adapted by U 22122025)
no comment
17664314612752
organism?
comment?
tsv file?
browse
or data?
Insert an example?
Please consider!
cushioning?
no comment
kegg_cl
no comment
17696041101218
no comment
Eubacterium limosum
no comment
17694843697761
Final
Eubacterium limosum
Final
17694837764268
no comment
Eubacterium Limosum
no comment
17694831942280
no comment
Eubacterium Limosum
no comment
17694825944961
no comment
Eubacterium Limosum
no comment
17694825520985
no comment
1
no comment
17694806539608
redo
PBU_DK_102425_2
redo
17688498147379
redo
PBU_DK_102425_2
redo
17688494601878
no comment
PBU_DK_10072025-3
no comment
17688493852886
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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