Bionic Visualizations

Proteomaps
Proteomaps show the quantitative composition of proteomes. Each protein is represented by a polygon: areas reflect protein abundance, and functionally related proteins are arranged in common and similarly colored regions. For further reading please see www.proteomaps.net
organism?
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cushioning?
no comment
Homo sapiens (Human)
no comment
17769361068594
no comment
Homo sapiens (Human)
no comment
17760880726891
no comment
Homo sapiens (Human)
no comment
17750538708049
no comment
Homo sapiens (Human)
no comment
17750537994498
no comment
Homo sapiens (Human)
no comment
17750515487678
no comment
Homo sapiens (Human)
no comment
17750515382079
lgs 300
Synechocystis species 6803 (Cyanobacterium)
lgs 300
17744742470233
sps efe 300
Synechocystis species 6803 (Cyanobacterium)
sps efe 300
17744740968832
sps 300
Synechocystis species 6803 (Cyanobacterium)
sps 300
17744730778471
glgc efe 300
Synechocystis species 6803 (Cyanobacterium)
glgc efe 300
17744727428467
organism?
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cushioning?
no comment
Homo sapiens (Human)
no comment
17773610611083
no comment
Homo sapiens (Human)
no comment
17773605979935
Lysates
Homo sapiens (Human)
Lysates
17773593550236
N2 vs N1 Down
Homo sapiens (Human)
N2 vs N1 Down
17773499066202
N2 vs N1 Up
Homo sapiens (Human)
N2 vs N1 Up
17773498794230
DKO Down
Homo sapiens (Human)
DKO Down
17773494141878
DKO Up
Homo sapiens (Human)
DKO Up
17773482265735
D vs N2 Down
Homo sapiens (Human)
D vs N2 Down
17773481973634
D vs N2 Up
Homo sapiens (Human)
D vs N2 Up
17773472887847
D vs N1 Down
Homo sapiens (Human)
D vs N1 Down
17773472645365
Before setting up an individual treemap template these issues need to be considered.
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user template previews
Annotationfile2025
Blueberry_Jhonny_CA_UoC_28042026_IDs (adapted by C 28042026) (adapted by C 28042026)
Annotationfile2025
17773666157018
Annotationfile2025
Blueberry_Jhonny_CA_UoC_28042026 (adapted by C 28042026)
Annotationfile2025
17773626200362
no comment
K.oxytoca (adapted by G 28042026)
no comment
17773122541514
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17770515754258
no comment
Klebsiella (adapted by G 23042026)
no comment
17768828177007
no comment
Komagataella phaffii(new)
no comment
17735471296432
no comment
Komagataella phaffii
no comment
17734868122264
no comment
VAtest (adapted by L 01032026)
no comment
17723897989527
no comment
V.album 250226 season (adapted by L 25022026)
no comment
17720382251030
no comment
Eubacterium limosum
no comment
17694827072328
organism?
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LRW
Blueberry_Jhonny_CA_UoC_28042026_IDs (adapted by C 28042026) (adapted by C 28042026)
LRW
17773696507725
LLW
Blueberry_Jhonny_CA_UoC_28042026_IDs (adapted by C 28042026) (adapted by C 28042026)
LLW
17773690568578
SRW
Blueberry_Jhonny_CA_UoC_28042026_IDs (adapted by C 28042026) (adapted by C 28042026)
SRW
17773690060414
SRM
Blueberry_Jhonny_CA_UoC_28042026_IDs (adapted by C 28042026) (adapted by C 28042026)
SRM
17773689831102
SRC
Blueberry_Jhonny_CA_UoC_28042026_IDs (adapted by C 28042026) (adapted by C 28042026)
SRC
17773689560057
LRM
Blueberry_Jhonny_CA_UoC_28042026_IDs (adapted by C 28042026) (adapted by C 28042026)
LRM
17773689285703
LRW
Blueberry_Jhonny_CA_UoC_28042026_IDs (adapted by C 28042026) (adapted by C 28042026)
LRW
17773689052001
LRC
Blueberry_Jhonny_CA_UoC_28042026_IDs (adapted by C 28042026) (adapted by C 28042026)
LRC
17773688887003
SLM
Blueberry_Jhonny_CA_UoC_28042026_IDs (adapted by C 28042026) (adapted by C 28042026)
SLM
17773669963413
SLC
Blueberry_Jhonny_CA_UoC_28042026_IDs (adapted by C 28042026) (adapted by C 28042026)
SLC
17773669705460
This website and the underlying treemap algorithm is provided for non profit research or/and academic organisations only.
The space proportional algorithm for the generation of Voronoi Treemaps has been implemented within the DFG Research Initiative SFB Transregio34 Z1.
For commercial applications please contact DECODON.
For individual access please set up a collaboration within academic research efforts with Jörg Bernhardt.
The idea of comparable treemaps for different biological species was born in Dec 2012 in a collaborative effort of Ron Milo, Weizmann Institute of Science; Wolfram Liebermeister, Charité - Universitätsmedizin Berlin and Jörg Bernhardt, Universität Greifswald.

If you have used Proteomaps for your research please cite:
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., and Milo R. (2014), Visual account of protein investment in cellular functions, PNAS 111 (23), 8488-8493.
Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., and Becher, D. (2010). Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.Nature Communications 1, 137.
Bernhardt J, Funke S, Hecker M, Siebourg J (2009) in Sixth International Symposium on Voronoi Diagrams, pp 233-241.
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